Methods and compounds for the treatment of immunologically - mediated diseases of the respiratory system using mycobacterium vaccae

ABSTRACT

Methods for the prevention and treatment by immunotherapy of lung immune disorders, including infection with mycobacteria such as  M. tuberculosis  or  M. avium,  sarcoidosis, asthma, allergic rhinitis and lung cancers are provided, such methods comprising administering a composition having antigenic and/or adjuvant properties. Compositions which may be usefully employed in the inventive methods include inactivated  M. vaccae  cells, delipidated and deglycolipidated  M. vaccae  cells,  M. vaccae  culture filtrate and compounds present in or derived therefrom, together with combinations of such components.

REFERENCE TO RELATED APPLICATIONS

[0001] This application is a continuation of U.S. patent application Ser. No. 09/156,181, filed Sep. 17, 1998, which is a continuation-in-part of U.S. patent application Ser. No. 08/996,624, filed Dec. 23, 1997.

TECHNICAL FIELD

[0002] The present invention relates generally to methods for treatment of diseases of the respiratory system which result from immune disorders. In particular, the invention is related to the use of compositions comprising inactivated Mycobacterium vaccae (M. vaccae), and/or compounds prepared from M. vaccae for the treatment and prevention of respiratory and/or lung disorders including mycobacterial infections, such as Mycobacterium tuberculosis and Mycobacterium avium, and for the treatment of disorders, such as sarcoidosis, asthma and lung cancers.

BACKGROUND OF THE INVENTION

[0003] Tuberculosis is a chronic, infectious disease, that is caused by infection with Mycobacterium tuberculosis (M. tuberculosis). It is a major disease in developing countries, as well as an increasing problem in developed areas of the world, with about 8 million new cases and 3 million deaths each year. Although the infection may be asymptomatic for a considerable period of time, the disease is most commonly manifested as a chronic inflammation of the lungs, resulting in fever and respiratory symptoms. If left untreated, significant morbidity and death may result.

[0004] Although tuberculosis can generally be controlled using extended antibiotic therapy, such treatment is not sufficient to prevent the spread of the disease. Infected individuals may be asymptomatic, but contagious, for some time. In addition, although compliance with the treatment regimen is critical, patient behavior is difficult to monitor. Some patients do not complete the course of treatment, which can lead to ineffective treatment and the development of drug resistant mycobacteria.

[0005] Inhibiting the spread of tuberculosis requires effective vaccination and accurate, early diagnosis of the disease. Currently, vaccination by subcutaneous or intradermal injection with live bacteria is the most efficient method for inducing protective immunity. The most common mycobacterium employed for this purpose is Bacillus Calmette-Guerin (BCG), an avirulent strain of Mycobacterium bovis (M. bovis). However, the safety and efficacy of BCG is a source of controversy and some countries, such as the United States, do not vaccinate the general public. Diagnosis of M. tuberculosis infection is commonly achieved using a skin test, which involves intradermal exposure to tuberculin PPD (protein-purified derivative). Antigen-specific T cell responses result in measurable induration at the injection site by 48-72 hours after injection, thereby indicating exposure to mycobacterial antigens. Sensitivity and specificity have, however, been a problem with this test, and individuals vaccinated with BCG cannot be distinguished from infected individuals.

[0006] A less well-known mycobacterium that has been used for immunotherapy for tuberculosis and also leprosy, by subcutaneous or intradermal injection, is Mycobacterium vaccae (M. vaccae), which is non-pathogenic in humans. However, there is less information on the efficacy of M. vaccae compared with BCG, and it has not been used widely to vaccinate the general public. M. bovis BCG and M. vaccae are believed to contain antigenic compounds that are recognized by the immune system of individuals exposed to infection with M. tuberculosis.

[0007] Several patents and other publications disclose treatment of various conditions by administering mycobacteria, including M. vaccae, or certain mycobacterial fractions. U.S. Pat. No. 4,716,038 discloses diagnosis of, vaccination against and treatment of autoimmune diseases of various types, including arthritic diseases, by administering mycobacteria, including M. vaccae. U.S. Pat. No. 4,724,144 discloses an immunotherapeutic agent comprising antigenic material derived from M. vaccae for treatment of mycobacterial diseases, especially tuberculosis and leprosy, and as an adjuvant to chemotherapy. International Patent Publication WO 91/01751 discloses the use of antigenic and/or immunoregulatory material from M. vaccae as an immunoprophylactic to delay and/or prevent the onset of AIDS. International Patent Publication WO 94/06466 discloses the use of antigenic and/or immunoregulatory material derived from M. vaccae for therapy of HIV infection, with or without AIDS and with or without associated tuberculosis.

[0008] U.S. Pat. No. 5,599,545 discloses the use of mycobacteria, especially whole, inactivated M. vaccae, as an adjuvant for administration with antigens which are not endogenous to M. vaccae. This publication theorises that the beneficial effect as an adjuvant may be due to heat shock protein 65 (hsp 65). International Patent Publication WO 92/08484 discloses the use of antigenic and/or immunoregulatory material derived from M. vaccae for the treatment of uveitis. International Patent Publication WO 93/16727 discloses the use of antigenic and/or immunoregulatory material derived from M. vaccae for the treatment of mental diseases associated with an autoimmune reaction initiated by an infection. International Patent Publication WO 95/26742 discloses the use of antigenic and/or immunoregulatory material derived from M. vaccae for delaying or preventing the growth or spread of tumours. International Patent Publication WO 91/02542 discloses the use of autoclaved M. vaccae in the treatment of chronic inflammatory disorders in which a patient demonstrates an abnormally high release of IL-6 and/or TNF or in which the patient's IgG shows an abnormally high proportion of agalactosyl IgG. Among the disorders mentioned in this publication are psoriasis, rheumatoid arthritis, mycobacterial disease, Crohn's disease, primary biliary cirrhosis, sarcoidosis, ulcerative colitis, systemic lupus erythematosus, multiple sclerosis, Guillain-Barre syndrome, primary diabetes mellitus, and some aspects of graft rejection.

[0009]M. vaccae is apparently unique among known mycobacterial species in that heat-killed preparations retain vaccine and immunotherapeutic properties. For example, M. tuberculosis BCG vaccines, used for vaccination against tuberculosis, employ live strains. Heat-killed M. bovis BCG and M. tuberculosis have no protective properties when employed in vaccines. A number of compounds have been isolated from a range of mycobacterial species which have adjuvant properties. The effect of such adjuvants is essentially to stimulate a particular immune response mechanism against an antigen from another species.

[0010] There are two general classes of compounds which have been isolated from mycobacterial species that exhibit adjuvant properties. The first are water soluble wax D fractions (R. G. White, I. Bernstock, R. G. S. Johns and E. Lederer, Immunology, 1:54, 1958; U.S. Pat. No. 4,036,953). The second are muramyl dipeptide-based substances (N-acetyl glucosamine and N-glycolymuramic acid in approximately equimolar amounts) as described in U.S. Pat. Nos. 3,956,481 and 4,036,953. These compounds differ from the delipidated and deglycolipidated M. vaccae (DD-M. vaccae) of the present invention in the following aspects of their composition:

[0011] 1. They are water-soluble agents, whereas DD-M. vaccae is insoluble in aqueous solutions.

[0012] 2. They consist of a range of small oligomers of the mycobacterial cell wall unit, either extracted from bacteria by various solvents, or digested from the cell wall by an enzyme. In contrast, DD-M. vaccae contains highly polymerised cell wall.

[0013] 3. All protein has been removed from their preparations by digestion with proteolytic enzymes. The only constituents of their preparations are the components of the cell wall peptidoglycan structure, namely alanine, glutamic acid, diaminopimelic acid, N-acetyl glucosamine, and N-glycolylmuramic acid. In contrast, DD-M. vaccae contains 50% w/w protein, comprising a number of distinct protein species.

[0014] The delivery of vaccines by nasal aerosols to reach lung tissue, or by oral delivery to the gastrointestinal tract has been generally limited to attenuated strains of virus. For example, vaccination against poliovirus has employed oral delivery of attenuated strains of this virus since the development of the Sabin vaccine. Aviron Incorporated and the National Institute of Allergy and Infectious Diseases in the United States have recently reported the successful use of an influenza vaccine administered in a nasal spray. In this case, a live attenuated influenza strain provided 93% protection against influenza in young children. Vaccines consisting of killed viruses or bacteria, or of recombinant proteins have not been delivered by nasal aerosol or oral delivery. There are several reasons for this. There are few reports of successful immunization resulting in T cell immunity or antibody synthesis employing these agents administered nasally. Further, oral delivery of proteins and killed organisms often results in the development of tolerance, which is exactly the reverse outcome sought in successful immunization.

[0015] Sarcoidosis is a disease of unknown cause characterized by granulomatous inflammation affecting many organs of the body and especially the lungs, lymph nodes and liver. Sarcoid granulomata are composed of mononuclear phagocytes, with epithelioid and giant cells in their center, and T lymphocytes. CD4 T lymphocytes are closely associated with the epithelioid cells while both CD4 and CD8 T lymphocytes accumulate at the periphery. The characteristic immunological abnormalities in sarcoidosis include peripheral blood and bronchoalveolar lavage hyper-globulinaemia and depression of ‘delayed type’ hypersensitivity reactions in the skin to tuberculin and other similar antigens, such as Candida and mumps. Peripheral blood lymphocyte numbers are reduced and CD4: CD8 ratios in peripheral blood are depressed to approximately 1-1.5:1. These are not manifestations of a generalized immune defect, but rather the consequence of heightened immunological activity which is ‘compartmentalized’ to sites of disease activity. In patients with pulmonary sarcoidosis, the total number of cells recovered by bronchoalveolar lavage is increased five- to ten-fold and the proportion of lymphocytes increased from the normal of less than 10-14% to between 15% and 50%. More than 90% of the lymphocytes recovered are T lymphocytes and the CD4:CD8 ratio has been reported to be increased from the value of 1.8:1 in normal controls to 10.5:1. The T lymphocytes are predominantly of the Th1 class, producing IFN-γ and IL-2 cytokines, rather than of the Th2 class. Following treatment, the increase in Th1 lymphocytes in sarcoid lungs is corrected.

[0016] Sarcoidosis involves the lungs in nearly all cases. Even when lesions are predominantly seen in other organs, subclinical lung involvement is usually present. While some cases of sarcoidosis resolve spontaneously, approximately 50% of patients have at least a mild degree of permanent organ dysfunction. In severe cases, lung fibrosis develops and progresses to pulmonary failure requiring lung transplantation. The mainstay of treatment for sarcoidosis is corticosteroids. Patients initially responding to corticosteroids often relapse and require treatment with other immunosuppressive drugs such as methotrexate or cyclosporine.

[0017] Asthma is a common disease, with a high prevalence in the developed world. Asthma is characterized by increased responsiveness of the tracheobronchial tree to a variety of stimuli, the primary physiological disturbance being reversible airflow limitation, which may be spontaneous or drug-related, and the pathological hallmark being inflammation of the airways. Clinically, asthma can be subdivided into extrinsic and intrinsic variants.

[0018] Extrinsic asthma has an identifiable precipitant, and can be thought of as being atopic, occupational and drug-induced. Atopic asthma is associated with the enhancement of a Th2-type of immune response with the production of specific immunoglobulin E (IgE), positive skin tests to common aeroallergens and/or atopic symptoms. It can be divided further into seasonal and perennial forms according to the seasonal timing of symptoms. The airflow obstruction in extrinsic asthma is due to nonspecific bronchial hyperesponsiveness caused by inflammation of the airways. This inflammation is mediated by chemicals released by a variety of inflammatory cells including mast cells, eosinophils and lymphocytes. The actions of these mediators result in vascular permeability, mucus secretion and bronchial smooth muscle constriction. In atopic asthma, the immune response producing airway inflammation is brought about by the Th2 class of T cells which secrete IL-4, IL-5 and IL-10. It has been shown that lymphocytes from the lungs of atopic asthmatics produce IL-4 and IL-5 when activated. Both IL-4 and IL-5 are cytokines of the Th2 class and are required for the production of IgE and involvement of eosinophils in asthma. Occupational asthma may be related to the development of IgE to a protein hapten, such as acid anhydrides in plastic workers and plicatic acid in some western red cedar-induced asthma, or to non-IgE related mechanisms, such as that seen in toluene diisocyanate-induced asthma. Drug-induced asthma can be seen after the administration of aspirin or other non-steroidal anti-inflammatory drugs, most often in a certain subset of patients who may display other features such as nasal polyposis and sinusitis. Intrinsic or cryptogenic asthma is reported to develop after upper respiratory tract infections, but can arise de novo in middle-aged or older people, in whom it is more difficult to treat than extrinsic asthma.

[0019] Asthma is ideally prevented by the avoidance of triggering allergens but this is not always possible nor are triggering allergens always easily identified. The medical therapy of asthma is based on the use of corticosteroids and bronchodilator drugs to reduce inflammation and reverse airway obstruction. In chronic asthma, treatment with corticosteroids leads to unacceptable adverse side effects.

[0020] Another disorder with a similar immune abnormality to asthma is allergic rhinitis. Allergic rhinitis is a common disorder and is estimated to affect at least 10% of the population. Allergic rhinitis may be seasonal (hay fever) caused by allergy to pollen. Non-seasonal or perennial rhinitis is caused by allergy to antigens such as those from house dust mite or animal dander.

[0021] The abnormal immune response in allergic rhinitis is characterised by the excess production of IgE antibodies specific against the allergen. The inflammatory response occurs in the nasal mucosa rather than further down the airways as in asthma. Like asthma, local eosinophilia in the affected tissues is a major feature of allergic rhinitis. As a result of this inflammation, patients develop sneezing, nasal discharge and congestion. In more severe cases, the inflammation extends to the eyes (conjunctivitis), palate and the external ear. While it is not life threatening, allergic rhinitis may be very disabling, prevent normal activities, and interfere with a person's ability to work. Current treatment involves the use of antihistamines, nasal decongestants and, as for asthma, sodium cromoglycate and corticosteroids.

[0022] Lung cancer is the leading cause of death from cancer. The incidence of lung cancer continues to rise and the World Health Organization estimates that by 2000 AD there will be 2 million new cases annually. Lung cancers may be broadly classified into two categories: small cell lung cancer (SCLC) which represents 20-25% of all lung cancers, and non-small cell lung cancer (NSCLC) which accounts for the remaining 75%. The majority of SCLC is caused by tobacco smoke. SCLC tend to spread early and 90% of patients present at diagnosis with involvement of the mediastinal lymph nodes in the chest. SCLC is treated by chemotherapy, or a combination of chemotherapy and radiotherapy. Complete response rates vary from 10% to 50%. For the rare patient without lymph node involvement, surgery followed by chemotherapy may result in cure rates exceeding 60%. The prognosis for NSCLC is more dismal, as most patients have advanced disease by the time of diagnosis. Surgical removal of the tumor is possible in a very small number of patients and the five year survival rate for NSCLC is only 5-10%.

[0023] The factors leading to the development of lung cancer are complex and multiple. Environmental and genetic factors interact and cause sequential and incremental abnormalities which lead to uncontrolled cell proliferation, invasion of adjacent tissues and spread to distant sites.

[0024] Both cell-mediated and humoral immunity have been shown to be impaired in patients with lung cancer. Radiotherapy and chemotherapy further impair the immune function of patients. Attempts have been made to immunize patients with inactivated tumour cells or tumour antigens to enhance host anti-tumor response. Bacillus Calmette-Guerin (BCG) has been administered into the chest cavity following lung cancer surgery to augment non-specific immunity. Attempts have been made to enhance anti-tumor immunity by giving patients lymphocytes treated ex vivo with interleukin-2. These lymphokine-activated lymphocytes acquire the ability to kill tumor cells. The current immunotherapies for lung cancer are still at a developmental stage and their efficacies yet to be established for the standard management of lung cancer.

[0025] There thus remains a need in the art for effective compositions and methods for the prevention and treatment of immune disorders of the respiratory system.

SUMMARY OF THE INVENTION

[0026] A Briefly stated, the present invention provides methods for the prevention and treatment by immunotherapy of immune disorders of the respiratory system, including infection with mycobacteria such as M. tuberculosis or M. avium, sarcoidosis, asthma, allergic rhinitis and lung cancers. The inventive methods comprise administering a composition having antigenic and/or adjuvant properties. In one aspect of the present invention, the compositions are administered to the airways leading to or located within the lungs, preferably by inhalation through the nose or mouth, and are preferably administered in aerosol forms. The compositions may also be administered by intradermal or subcutaneous routes.

[0027] In one embodiment, compositions which may be usefully employed in the inventive methods comprise a component selected from the group consisting of inactivated M. vaccae cells, M. vaccae culture filtrate, delipidated and deglycolipidated M. vaccae cells, and combinations thereof.

[0028] In a first aspect, the inventive methods comprise administering one or more doses of a composition including a component selected from the group consisting of inactivated M. vaccae cells, delipidated and deglycolipidated M. vaccae cells, and components that are present in or derived from either M. vaccae cells or M. vaccae culture filtrate. Specific examples of components present in or derived from either M. vaccae cells or M. vaccae culture filtrate include isolated polypeptides that comprise a sequence selected from the group consisting of SEQ ID NO: 1-4, 9-16, 18-21, 23, 25, 26, 28, 29, 44, 45, 47, 52-55, 63, 64, 70, 75, 89, 94, 98, 100-105, 109, 110, 112, 121, 124, 125, 134, 135, 140, 141, 143, 145, 147, 152, 154, 156, 158, 160, 165, 166, 170, 172, 174, 177, 178, 181, 182, 184, 186, 187, 192, 194, 201, 203, 205 and 207, and variants thereof.

[0029] In a second aspect, the inventive methods comprise administering a first dose of a composition at a first point in time and administering a second dose of the composition at a second, subsequent, point in time. Preferably, the multiple doses are administered at intervals of about 2-4 weeks. In one embodiment, compositions which may be usefully employed in such methods comprise a component selected from the group consisting of inactivated M. vaccae cells, M. vaccae culture filtrate, delipidated and deglycolipidated M. vaccae cells, and constituents and combinations thereof.

[0030] Additional compositions which may be usefully employed in the inventive methods comprise a DNA molecule encoding one or more of the above polypeptides. Compositions comprising a fusion protein, wherein the fusion protein includes at least one of the above polypeptides, together with DNA molecules encoding such fusion proteins, may also be usefully employed in the methods of the present invention.

[0031] The compositions employed in the present invention may additionally include a non-specific immune response enhancer, or adjuvant. Such adjuvants may include M. vaccae culture filtrate, delipidated and deglycolipidated M. vaccae cells, or an isolated polypeptide comprising a sequence provided in SEQ ID NO: 89, 117, 160, 162 or 201, or a variant thereof.

[0032] In another aspect, the present invention provides methods for the treatment of a disorder of the respiratory system in a patient by the administration of one or more of the above compositions, wherein the disorder is characterized by the presence of eosinophilia in the tissues of the respiratory system. Examples of such diseases include asthma and allergic rhinitis. In a related aspect, the present invention provides methods for the reduction of eosinophilia, in a patient, such methods comprising administering at least one of the compositions disclosed herein. Typically, the reduction in eosinophilia will vary between about 20% and about 80%. The percentage of reduction in lung eosinophilia can be determined by measuring the number of eosinophils in bronchoalveolar lavage fluid before and after treatment as described below in Example 2.

[0033] These and other aspects of the present invention will become apparent upon reference to the following detailed description and attached drawings. All references disclosed herein are hereby incorporated by reference in their entirety as if each was incorporated individually.

BRIEF DESCRIPTION OF THE DRAWINGS

[0034]FIG. 1 compares the stimulation of IL-12 production in macrophages by different concentrations of heat-killed M. vaccae, lyophilized M. vaccae, delipidated and deglycolipidated M. vaccae and M. vaccae glycolipids.

[0035]FIG. 2 compares the stimulation of interferon-gamma production in spleen cells from SCID mice by different concentrations of heat-killed M. vaccae, lyophilized M. vaccae, delipidated and deglycolipidated M. vaccae and M. vaccae glycolipids.

[0036] FIGS. 3A(i)-(iv) illustrate the non-specific immune amplifying effects of 10 μg, 100 μg and 1 mg autoclaved M. vaccae and 75 μg unfractionated culture filtrates of M. vaccae, respectively. FIGS. 3B(i) and (ii) illustrate the non-specific immune amplifying effects of autoclaved M. vaccae, and delipidated and deglycolipidated M. vaccae, respectively. FIG. 3C(i) illustrates the non-specific immune amplifying effects of whole autoclaved M. vaccae. FIG. 3C(ii) illustrates the non-specific immune amplifying effects of soluble M. vaccae proteins extracted with SDS from delipidated and deglycolipidated M vaccae. FIG. 3C(iii) illustrates that the adjuvant effect of the preparation of FIG. 3C(ii) is destroyed by treatment with the proteolytic enzyme pronase. FIG. 3D illustrates the non-specific immune amplifying effects of heat-killed M. vaccae (FIG. 3D(i)), whereas heat-killed preparations of M. tuberculosis (FIG. 3D(ii)), M. bovis BCG (FIG. 3D(iii)), M. phlei (FIG. 3D(iv)) and M. smegmatis (FIG. 3D(v)) did not demonstrate non-specific immune amplifying effects.

[0037]FIGS. 4A and B show the percentage of eosinophils in mice immunized intranasally with either 10 or 1000 μg of heat-killed M. vaccae or 200-100 μg of DD-M. vaccae, respectively, 4 weeks prior to challenge with ovalbumin, as compared to control mice. FIGS. 4C and D show the percentage of eosinophils in mice immunized intranasally with either 100 μg of heat-killed M. vaccae or 200 μg of DD-M. vaccae, respectively, as late as one week prior to challenge with ovalbumin. FIG. 4E shows the percentage of eosinophils in mice immunized either intranasally (i.n.) or subcutaneously (s.c.) with either BCG of the Pasteur strain (BCG-P), BCG of the Connought strain (BCG-C), 1 mg of heat-killed M. vaccae, or 200 μg of DD-M. vaccae prior to challenge with ovalbumin.

[0038]FIG. 5 illustrates the non-specific immune amplifying property of each of the recombinant proteins GV27, 27A, 27B, 23 and 45 in the generation of cytotoxic T cells to a structurally unrelated protein, ovalbumin.

DETAILED DESCRIPTION OF THE INVENTION

[0039] As detailed below, the inventors have successfully induced T cell immune responses and protective immunity against M. tuberculosis in rodents and non-human primates following immunization with heat-killed M. vaccae and various M. vaccae derivatives through the lung. The inventors have additionally demonstrated that both heat-killed M. vaccae and M. vaccae derivatives are able to inhibit the development of an allergic immune response in the lungs when administered either intranasally or subcutaneously in a rodent model of asthma.

[0040] Effective vaccines that provide protection against infectious microorganisms contain at least two functionally different components. The first is a polypeptide antigen, which is processed by macrophages and other antigen-presenting cells and displayed for CD4⁺ T cells or for CD8⁺ T cells. This antigenic component forms the “specific” target of an immune response. The second component of a vaccine is a non-specific immune response amplifier, termed an adjuvant, with which the antigen is mixed or is incorporated into. An adjuvant amplifies immune responses to a structurally unrelated compound or antigen. Several known adjuvants are prepared from microbes such as Bordetella pertussis, M. tuberculosis and M. bovis BCG. Adjuvants may also contain components designed to protect polypeptide antigens from degradation, such as aluminum hydroxide or mineral oil. While the antigenic component of a vaccine contains polypeptides that direct the immune attack against a specific pathogen, such as M. tuberculosis, the adjuvant is often capable of broad use in many different vaccine formulations. Some known proteins, such as bacterial enterotoxins, can function both as an antigen to elicit a specific immune response and as an immune response amplifier to enhance immune responses to other antigens.

[0041] Certain pathogens, such as M. tuberculosis, as well as certain cancers, are effectively contained by an immune attack directed by CD4⁺ T cells, known as cell-mediated immunity. Other pathogens, such as poliovirus, also require antibodies, produced by B cells, for containment. These different classes of immune attack (T cell or B cell) are controlled by different subpopulations of CD4⁺ T cells, commonly referred to as Th1 and Th2 cells.

[0042] The two types of Th cell subsets have been well characterized in a murine model and are defined by the cytokines they release upon activation. The Th1 subset secretes IL-2, IFN-γ and tumor necrosis factor, and mediates macrophage activation and delayed-type hypersensitivity response. The Th2 subset releases IL-4, IL-5, IL-6 and IL-10, which stimulate B cell activation. The Th1 and Th2 subsets are mutually inhibiting, so that IL-4 inhibits Th1-type responses, and IFN-γ inhibits Th2-type responses. Similar Th1 and Th2 subsets have been found in humans, with release of the identical cytokines observed in the murine model. Amplification of Th1-type immune responses is central to a reversal of disease state in many disorders, including disorders of the respiratory system such as tuberculosis, sarcoidosis, asthma, allergic rhinitis and lung cancers.

[0043] Inactivated M. vaccae and compounds derived from M. vaccae have both antigenic and adjuvant properties. The methods of the present invention employ compounds from M. vaccae and/or its culture filtrates that have T cell enhancing immune activities. Mixtures of such compounds are particularly useful in redirecting immune activities of T cells in patients. While it is well known that all mycobacteria contain many cross-reacting antigens, it is not known whether they contain adjuvant compounds in common. As shown below, inactivated M. vaccae cells and a modified (delipidated and deglycolipidated) form of M. vaccae have been found to have adjuvant properties which are not shared by a number of other mycobacterial species. Furthermore, it has been found that M. vaccae produces compounds in its own culture filtrate which amplify a Th1-type immune response to M. vaccae antigens also found in culture filtrate, as well as to antigens from other sources.

[0044] The present invention provides methods for the immunotherapy of respiratory and/or lung disorders, including tuberculosis, sarcoidosis, asthma, allergic rhinitis and lung cancers, in a patient to enhance Th1-type immune responses. In one embodiment, the compositions are delivered directly to the mucosal surfaces of airways leading to and/or within the lungs. However, the compositions may also be administered via intradermal or subcutaneous routes. Compositions which may be usefully employed in the inventive methods comprise at least one of the following components: inactivated M. vaccae cells; M. vaccae culture filtrate; delipidated and deglycolipidated M. vaccae cells (DD-M. vaccae); and compounds present in or derived from M. vaccae and/or its culture filtrate. As illustrated below, administration of such compositions, results in specific T cell immune responses and enhanced protection against M. tuberculosis infection. Administration of such compositions is also effective in the treatment of asthma. While the precise mode of action of these compositions in the treatment of diseases such as asthma is unknown, they are believed to suppress an asthma-inducing Th2 immune response.

[0045] Inactivated M. vaccae are M. vaccae that have either been killed by means of heat, as detailed below, or subjected to radiation, such as ⁶⁰cobalt at a dose of 2.5 megarads. As detailed in Example 3, the inventors have shown that removal of the glycolipid constituents from M. vaccae results in the removal of molecular components that stimulate interferon-gamma production in natural killer (NK) cells, thereby significantly reducing the non-specific production of a cytokine that has numerous harmful side-effects.

[0046] As used herein the term “respiratory system” refers to the lungs, nasal passageways, trachea and bronchial passageways.

[0047] As used herein the term “airways leading to or located in the lung” includes the nasal passageways, mouth, tonsil tissue, trachea and bronchial passageways.

[0048] As used herein, a “patient” refers to any warm-blooded animal, preferably a human. Such a patient may be afflicted with disease or may be free of detectable disease. In other words, the inventive methods may be employed to induce protective immunity for the prevention or treatment of disease.

[0049] As used herein the term “inactivated M. vaccae” refers to M. vaccae cells that have either been killed by means of heat, as detailed below in Examples 1 and 2, or subjected to radiation, such as ⁶⁰Cobalt at a dose of 2.5 megarads. As used herein, the term “modified M. vaccae” includes delipidated M. vaccae cells, deglycolipidated M. vaccae cells and M. vaccae cells that have been both delipidated and deglycolipidated.

[0050] Delipidated and deglycolipidated M. vaccae may be prepared as described below in Example 1. As detailed below, the inventors have shown that removal of the glycolipid constituents from M. vaccae results in the removal of molecular components that stimulate interferon-gamma production in natural killer (NK) cells, thereby significantly reducing the non-specific production of a cytokine that has numerous harmful side-effects.

[0051] Compounds present in or derived from M. vaccae cells and/or from M. vaccae culture filtrate that may be usefully employed in the inventive methods include M. vaccae polypeptides, or variants thereof. Such polypeptides possess antigenic and/or adjuvant properties. In specific embodiments, such polypeptides comprise a sequence selected from the group consisting of SEQ ID NO: 1-4, 9-16, 18-21, 23, 25, 26, 28, 29, 44, 45, 47, 52-55, 63, 64, 70, 75, 89, 94, 98, 100-105, 109, 110, 112, 121, 124, 125, 134, 135, 140, 141, 143, 145, 147, 152, 154, 156, 158, 160, 165, 166, 170, 172, 174, 177, 178, 181, 182, 184, 186, 187, 192, 194, 201, 203, 205 and 207.

[0052] As used herein, the term “polypeptide” encompasses amino acid chains of any length, including full length proteins (i.e. antigens), wherein the amino acid residues are linked by covalent peptide bonds. A polypeptide may comprise an immunogenic portion of an antigen. Such polypeptides may consist entirely of the immunogenic portion, or may contain additional sequences. The additional sequences may be derived from the native M. vaccae antigen or may be heterologous, and such sequences may (but need not) be immunogenic. As detailed below, polypeptides of the present invention may be isolated from M. vaccae cells or culture filtrate, or may be prepared by synthetic or recombinant means.

[0053] “Immunogenic”, as used herein, refers to the ability of a polypeptide to elicit an immune response in a patient, such as a human, or in a biological sample. In particular, immunogenic antigens are capable of stimulating cell proliferation, interleukin-12 production or interferon-γ production in biological samples comprising one or more cells selected from the group of T cells, NK cells, B cells and macrophages, where the cells are derived from an individual previously exposed to tuberculosis. Exposure to an immunogenic antigen usually results in the generation of immune memory such that upon re-exposure to that antigen, an enhanced and more rapid response occurs.

[0054] Immunogenic portions of the antigens described herein may be prepared and identified using well known techniques, such as those summarised in Paul, Fundamental Immunology, 3d ed., Raven Press, 1993, pp. 243-247. Such techniques include screening polypeptide portions of the native antigen or protein for immunogenic properties. The representative proliferation and cytokine production assays described herein may be employed in these screens. An immunogenic portion of an antigen is a portion that, within such representative assays, generates an immune response (e.g., cell proliferation, interferon-γ production or interleukin-12 production) that is substantially similar to that generated by the full-length antigen. In other words, an immunogenic portion of an antigen may generate at least about 20%, preferably about 65%, and most preferably about 100% of the proliferation induced by the full-length antigen in the model proliferation assay described herein. An immunogenic portion may also, or alternatively, stimulate the production of at least about 20%, preferably about 65% and most preferably about 100%, of the interferon-γ and/or interleukin-12 induced by the full length antigen in the model assay described herein.

[0055] A M. vaccae adjuvant is a compound found in M. vaccae cells or M. vaccae culture filtrates which non-specifically stimulates immune responses. Adjuvants enhance the immune response to immunogenic antigens and the process of memory formation. In the case of M. vaccae proteins, these memory responses favor Th1-type immunity. Adjuvants are also capable of stimulating interleukin-12 production or interferon-γ production in biological samples comprising one or more cells selected from the group of T cells, NK cells, B cells and macrophages, where the cells are derived from healthy individuals. Adjuvants may or may not stimulate cell proliferation. Such M. vaccae adjuvants include, for example, polypeptides comprising a sequence recited in SEQ ID NO: 89, 117, 160, 162 or 201.

[0056] The compositions for use in the inventive methods also encompass variants of the above polypeptides. Such variants include, but are not limited to, naturally occurring allelic variants. As used herein, the term “variant” covers any sequence which exhibits at least about 50%, more preferably at least about 70% and more preferably yet, at least about 90% overall identity to a sequence of the present invention. In one embodiment, a “variant” is any sequence which has at least about a 99% probability of being the same as the inventive sequence. The probability and/or identity for DNA sequences is measured using the computer algorithm BLASTN and that for protein sequences is measured using the computer algorithm BLASTP (Altschul, S. F. et al. Nucleic Acids Res. 25:3389-3402, 1997). The term “variants” thus encompasses sequences wherein the probability of finding a match by chance (smallest sum probability), is less than about 1% as measured by any of the above tests. Both BLASTN and BLASTP are available on the NCBI anonymous FTP server under/blast/executables/. For BLASTP the following running parameters are preferred: blastall -p blastp -d swissprotdb -e 10 -G 1 -E 1 -v 50 -b 50 -i

[0057] queryseq -o results

[0058] -p Program Name [String]

[0059] -d Database [String]

[0060] -e Expectation value (E) [Real]

[0061] -G Cost to open a gap (zero invokes default behavior) [Integer]

[0062] -E Cost to extend a gap (zero invokes default behavior) [Integer]

[0063] -v Number of one-line descriptions (v) [Integer]

[0064] -b Number of alignments to show (b) [Integer]

[0065] -I Query File [File In]

[0066] -o BLAST report Output File [File Out] Optional For BLASTN the following running parameters are preferred: blastall -p blastn d embldb -e 10 -G 1 -E 1 -r 2 -v 50 -b 50 -i queryseq -o results

[0067] -p Program Name [String]

[0068] -d Database [String]

[0069] -e Expectation value (E) [Real]

[0070] -G Cost to open a gap (zero invokes default behavior) [Integer]

[0071] -E Cost to extend a gap (zero invokes default behavior) [Integer]

[0072] -r Reward for a nucleotide match (blastn only) [Integer]

[0073] -v Number of one-line descriptions (v) [Integer]

[0074] -b Number of alignments to show (b) [Integer]

[0075] -I Query File [File In]

[0076] -o BLAST report Output File [File Out] Optional

[0077] Variant nucleotide sequences will generally hybridize to the recited nucleotide sequence under stringent conditions. As used herein, “stringent conditions” refers to prewashing in a solution of 6× SSC, 0.2% SDS; hybridizing at 65° C., 6× SSC, 0.2% SDS overnight; followed by two washes of 30 minutes each in 1× SSC, 0.1% SDS at 65° C. and two washes of 30 minutes each in 0.2× SSC, 0.1% SDS at 65° C.

[0078] Portions and other variants of M. vaccae polypeptides may be generated by synthetic or recombinant means. Synthetic polypeptides having fewer than about 100 amino acids, and generally fewer than about 50 amino acids, may be generated using techniques well known to those of ordinary skill in the art. For example, such polypeptides may be synthesized using any of the commercially available solid-phase techniques, such as the Merrifield solid-phase synthesis method, where amino acids are sequentially added to a growing amino acid chain. See Merrifield, J Am. Chem. Soc. 85:2149-2146, 1963. Equipment for automated synthesis of polypeptides is commercially available from suppliers such as Perkin Elmer/Applied BioSystems, Inc. (Foster City, Calif.), and may be operated according to the manufacturer's instructions. Variants of a native antigen or adjuvant may be prepared using standard mutagenesis techniques, such as oligonucleotide-directed site specific mutagenesis. Sections of the DNA sequence may also be removed using standard techniques to permit preparation of truncated polypeptides.

[0079] A polypeptide of the present invention may be conjugated to a signal (or leader) sequence at the N-terminal end of the protein which co-translationally or post-translationally directs transfer of the protein. The polypeptide may also be conjugated to a linker or other sequence for ease of synthesis, purification or identification of the polypeptide (e.g., poly-His), or to enhance binding of the polypeptide to a solid support. For example, a polypeptide may be conjugated to an immunoglobulin Fc region.

[0080] In general, M. vaccae polypeptides, and DNA sequences encoding such polypeptides, may be prepared using any of a variety of procedures. For example, soluble polypeptides may be isolated from M. vaccae culture filtrate as described below. Polypeptides may also be produced recombinantly by inserting a DNA sequence that encodes the polypeptide into an expression vector and expressing the polypeptides in an appropriate host. Any of a variety of expression vectors known to those of ordinary skill in the art may be employed. Expression may be achieved in any appropriate host cell that has been transformed or transfected with an expression vector containing a DNA molecule that encodes recombinant polypeptide. Suitable host cells include prokaryotes, yeast and higher eukaryotic cells. Preferably, the host cells employed are E. coli, yeast or a mammalian cell line such as COS or CHO. The DNA sequences expressed in this manner may encode naturally occurring polypeptides, portions of naturally occurring polypeptides, or other variants thereof.

[0081] DNA sequences encoding M. vaccae polypeptides may be obtained by screening an appropriate M. vaccae cDNA or genomic DNA library for DNA sequences that hybridize to degenerate oligonucleotides derived from partial amino acid sequences of isolated soluble polypeptides. Suitable degenerate oligonucleotides may be designed and synthesized, and the screen may be performed as described, for example, in Maniatis et al., Molecular Cloning—A Laboratory Manual, Cold Spring Harbor Laboratories, Cold Spring Harbor, N.Y., 1989. As described below, polymerase chain reaction (PCR) may be employed to isolate a nucleic acid probe from genomic DNA, or a cDNA or genomic DNA library. The library screen may then be performed using the isolated probe.

[0082] DNA molecules encoding M. vaccae polypeptides may also be isolated by screening an appropriate M. vaccae cDNA or genomic DNA expression library with anti-sera (e.g., rabbit or monkey) raised specifically against M. vaccae polypeptides, as detailed below.

[0083] Regardless of the method of preparation, the polypeptides described herein have the ability to induce and/or enhance an immunogenic response. More specifically, the polypeptides have the ability to induce and/or enhance cell proliferation and/or cytokine production (for example, interferon-γ and/or interleukin-12 production) in T cells, NK cells, B cells or macrophages derived from an M. tuberculosis-immune individual. A M. tuberculosis-immune individual is one who is considered to be resistant to the development of tuberculosis by virtue of having mounted an effective T cell response to M. tuberculosis. Such individuals may be identified based on a strongly positive (i.e., greater than about 10 mm diameter induration) intradermal skin test response to tuberculosis proteins (PPD), and an absence of any symptoms of tuberculosis infection.

[0084] Assays for cell proliferation or cytokine production in T cells, NK cells, B cell macrophages may be performed, for example, using the procedures described below. The selection of cell type for use in evaluating an immune response to an antigen will depend on the desired response. For example, interleukin-12 or interferon-γ production is most readily evaluated using preparations containing T cells, NK cells, B cells and macrophages derived from individuals using methods well known in the art. For example, a preparation of peripheral blood mononuclear cells (PBMCs) may be employed without further separation of component cells.

[0085] PBMCs may be prepared, for example, using density centrifugation through FiColl™ (Winthrop Laboratories, NY). T cells for use in the assays described herein may be purified directly from PBMCs.

[0086] In general, regardless of the method of preparation, the polypeptides employed in the inventive methods are prepared in an isolated, substantially pure, form. Preferably, the polypeptides are at least about 80% pure, more preferably at least about 90% pure and most preferably at least about 99% pure. In certain preferred embodiments, described in detail below, the isolated polypeptides are incorporated into pharmaceutical compositions or vaccines for use in one or more of the methods disclosed herein.

[0087] Fusion proteins comprising a first and a second inventive polypeptide disclosed herein or, alternatively, a polypeptide disclosed herein and a known M. tuberculosis antigen, such as the 38 kDa antigen described in Andersen and Hansen, Infect. Immun. 57:2481-2488, 1989, together with variants of such fusion proteins, may also be employed in the inventive methods. Such fusion proteins may include a linker peptide between the first and second polypeptides. A DNA sequence encoding such a fusion protein is constructed using known recombinant DNA techniques to assemble separate DNA sequences encoding the first and second polypeptides into an appropriate expression vector. The end of a DNA sequence encoding the first polypeptide is ligated, with or without a peptide linker, to the 5′ end of a DNA sequence encoding the second polypeptide so that the reading frames of the sequences are in phase to permit mRNA translation of the two DNA sequences into a single fusion protein that retains the biological activity of both the first and the second polypeptides.

[0088] A peptide linker sequence may be employed to separate the first and the second polypeptides by a distance sufficient to ensure that each polypeptide folds into its secondary and tertiary structures. Such a peptide linker sequence is incorporated into the fusion protein using standard techniques well known in the art. Suitable peptide linker sequences may be chosen based on the following factors: (1) their ability to adopt a flexible extended conformation; (2) their inability to adopt a secondary structure that could interact with functional epitopes on the first and second polypeptides; and (3) the lack of hydrophobic or charged residues that might react with the polypeptide functional epitopes. Preferred peptide linker sequences contain Gly, Asn and Ser residues. Other near neutral amino acids, such as Thr and Ala may also be used in the linker sequence. Amino acid sequences which may be usefully employed as linkers include those disclosed in Maratea et al., Gene 40:39-46, 1985; Murphy et al., Proc. Natl. Acad Sci. USA 83:8258-8262, 1986; U.S. Pat. No. 4,935,233 and U.S. Pat. No. 4,751,180. The linker sequence may be from 1 to about 50 amino acids in length. Peptide linker sequences are not required when the first and second polypeptides have non-essential N-terminal amino acid regions that can be used to separate the functional domains and prevent steric interference. The ligated DNA sequences encoding the fusion proteins are cloned into suitable expression systems using techniques known to those of ordinary skill in the art.

[0089] For use in the inventive methods, the inactivated M. vaccae cell, M. vaccae culture filtrate, delipidated and deglycolipidated M. vaccae cells, or compounds present in or derived from M. vaccae and/or its culture filtrate are generally present within a pharmaceutical composition or a vaccine. Pharmaceutical compositions may comprise one or more polypeptides, each of which may contain one or more of the above sequences (or variants thereof), and a physiologically acceptable carrier. Vaccines may comprise one or more components selected from the group consisting of inactivated M. vaccae cells, M. vaccae culture filtrate, delipidated and deglycolipidated M. vaccae cells, and compounds present in or derived from M. vaccae and/or its culture filtrate, together with a non-specific immune response amplifier. Such pharmaceutical compositions and vaccines may also contain other mycobacterial polypeptides, either, as discussed above, incorporated into a fusion protein or present within a separate polypeptide.

[0090] Alternatively, a vaccine or pharmaceutical composition for use in the methods of the present invention may contain DNA encoding one or more polypeptides as described above, such that the polypeptide is generated in situ. In such vaccines, the DNA may be present within any of a variety of delivery systems known to those of ordinary skill in the art, including nucleic acid expression systems, bacterial and viral expression systems. Appropriate nucleic acid expression systems contain the necessary DNA sequences for expression in the patient (such as a suitable promoter and terminator signal). Bacterial delivery systems involve the administration of a bacterium (such as Bacillus-Calmette-Geurin) that expresses an immunogenic portion of the polypeptide on its cell surface. In a preferred embodiment, the DNA may be introduced using a viral expression system (e.g., vaccinia or other pox virus, retrovirus, or adenovirus), which may involve the use of a non-pathogenic, or defective, replication competent virus. Techniques for incorporating DNA into such expression systems are well known in the art. The DNA may also be “naked,” as described, for example, in Ulmer et al., Science 2.59:1745-1749, 1993 and reviewed by Cohen, Science 259:1691-1692. 1993. The uptake of naked DNA may be increased by coating the DNA onto biodegradable beads, which are efficiently transported into the cells.

[0091] In one embodiment, the pharmaceutical composition or vaccine is in a form suitable for delivery to the mucosal surfaces of the airways leading to or within the lungs. For example, the pharmaceutical composition or vaccine may be suspended in a liquid formulation for delivery to a patient in an aerosol form or by means of a nebulizer device similar to those currently employed in the treatment of asthma. In other embodiments, the pharmaceutical composition or vaccine is in a form suitable for administration by injection (intracutaneous, intramuscular, intravenous or subcutaneous) or orally. While any suitable carrier known to those of ordinary skill in the art may be employed in the pharmaceutical compositions of this invention, the type of carrier will depend on the suitability for the chosen route of administration. Examples of carriers which may be usefully employed in the inventive methods include mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, glucose, sucrose, and magnesium carbonate. Biodegradable microspheres (e.g., polylactic galactide) may also be employed as carriers for the pharmaceutical compositions of this invention. Suitable biodegradable microspheres are disclosed, for example, in U.S. Pat. Nos. 4,897,268 and 5,075,109. Any of a variety of adjuvants may be employed in the vaccines of this invention to non-specifically enhance the immune response.

[0092] The preferred frequency of administration and effective dosage will vary from individual to individual. In general, the amount of polypeptide present in a dose (or produced in situ by the DNA in a dose) ranges from about 1 pg to about 100 mg per kg of host, typically from about 10 pg to about 1 mg, and preferably from about 100 pg to about 1 μg. Suitable dose sizes will vary with the size of the patient, but will typically range from about 0.1 mL to about 5 mL. In the case of inactivated M. vaccae cells, the amount present in a dose preferably ranges from about 10 to about 1000 mg, and is more preferably about 500 mg. For DD-M. vaccae, the amount present in a dose preferably ranges from about 10 μg to about 1000 μg, more preferably from about 50 μg to about 200 μg. For both inactivated M. vaccae and DD-M. vaccae, the number of doses may range from 1 to about 10 administered over a period of up to 12 months.

[0093] The word “about,” when used in this application with reference to the amount of active component in a dose, contemplates a variance of up to 5% from the stated amount. The word “about,” when used with reference to a percentage reduction of eosinophils, contemplates a variance of up to 10% from the stated percentage.

[0094] The following examples are offered by way of illustration and are not limiting.

EXAMPLE 1 Effect of Intradermal and Intra-lung Routes of Immunization with M. vaccae on Tuberculosis in Cynomolgous Monkeys

[0095] This example illustrates the effect of immunization with heat-killed M. vaccae or M. vaccae culture filtrate through intradermal and intralung routes in cynomolgous monkeys prior to challenge with live M. tuberculosis.

[0096]M. vaccae (ATCC Number 15483) was cultured in sterile Medium 90 (yeast extract, 2.5 g/l; tryptone, 5g/l; glucose, 1 g/l) at 37° C. The cells were harvested by centrifugation, and transferred into sterile Middlebrook 7H9 medium (Difco Laboratories, Detroit, Mich., USA) with glucose at 37° C. for one day. The medium was then centrifuged to pellet the bacteria, and the culture filtrate removed. The bacterial pellet was resuspended in phosphate buffered saline at a concentration of 10 mg/ml, equivalent to 10¹⁰ M. vaccae organisms per ml. The cell suspension was then autoclaved for 15 min at 120° C. The culture filtrate was passaged through a 0.45 μM filter into sterile bottles.

[0097] Five groups of cynomolgous monkeys were used, with each group containing 2 monkeys. Two groups of monkeys were immunized with whole heat-killed M. vaccae either intradermally or intralung; two groups of monkeys were immunized with M. vaccae culture filtrate either intradermally or intralung; and a control group received no immunizations. All immunogens were dissolved in phosphate buffered saline. The composition employed for immunization, amount of immunogen, and route of administration for each group of monkeys are provided in Table 1. Prior to immunization, all monkeys were weighed (Wt kg), body temperature was measured (temp), and a blood sample taken for determination of erythrocyte sedimentation rate (ESR mm/hr) and lymphocyte proliferation (LPA) to an in vitro challenge with purified protein (PPD) prepared from Mycobacterium bovis. Both ESR and LPA have been used as indicators of inflammatory T cell responses. At day 33 post-immunization these measurements were repeated. At day 34, all monkeys received a second immunization using the same amount of M. vaccae and route of immunization as the initial immunization. On day 62, body weight, temperature, ESR and LPA to PPD were measured, then all monkeys were infected with 10³ colony forming units of the Erdman strain of Mycobacterium tuberculosis by inserting the organisms directly in the right lungs of immunized animals. Twenty eight days following infection, body weight, temperature, ESR and LPA to PPD were measured in all monkeys, and the lungs were x-rayed to determine whether infection with live M. tuberculosis had resulted in the onset of pneumonia. TABLE 1 COMPARISON OF INTRADERMAL AND INTRALUNG ROUTES OF IMMUNIZATION Identification Group Number of Amount of Route of Number Monkey Immunogen Immunization 1 S3101-E  0 — (Controls) 3144-B  0 — 2 4080-B 500 μg intradermal (Immunized 3586-B 500 μg intradermal with heat-killed M. vaccae) 3 3534-C 500 μg intralung (Immunized 3160-A 500 μg intralung with heat-killed M. vaccae) 4 3564-B 100 μg intradermal (Immunized 3815-B 100 μg intradermal with culture filtrate) 5 4425-A 100 μg intralung (Immunized 2779-D 100 μg intralung with culture filtrate)

[0098] The results of these studies are provided below in Tables 2A-E and are summarized below:

[0099] Table 2A—Twenty-eight days after infection with M. tuberculosis Erdman, chest x-rays of control (non-immunized) monkeys revealed haziness over the right suprahilar regions of both animals, indicating the onset of pneumonia. This progressed and by day 56 post-infection x-rays indicated disease in both lungs. As expected, as disease progressed both control animals lost weight and showed significant LPA responses to PPD, indicating strong T cell reactivity to M. tuberculosis. The ESR measurements were variable but consistent with strong immune reactivity.

[0100] Table 2B—The two monkeys immunized twice with 500 μg M. vaccae intradermally showed no sign of lung disease 84 days post-infection with M. tuberculosis. The LPA responses to PPD indicated there was immune reactivity to M. tuberculosis, and both animals continued to gain weight, a consistent indication of a lack of disease.

[0101] Table 2C—The two monkeys immunized twice with 500 μg M. vaccae intralung showed almost identical results to those animals of Table 2B. There was no sign of lung disease 84 days post infection with M. tuberculosis, with consistent weight gains. Both animals showed LPA response to PPD in the immunization phase (day 0-62) and post-infection, indicating strong T cell reactivity had developed as a result of using the lung as the route of immunization and subsequent infection.

[0102] Immunization twice with 500 μg of whole M. vaccae has consistently shown protective effects agsint subsequent infection with live M. tuberculosis. The data presented in Tables 2D and 2E show the effects of immunization with 100 μg of M. vaccae culture filtrate. Monkeys immunized intradermally showed signs of developing disease 84 days post-infection, while in those immunized intralung, one animal showed disease after 56 days and one animal showed disease 84 days post-infection. This was a significant delay in disease onset indicating that the immunization process had resulted in some protective immunity. TABLE 2A CONTROL MONKEYS Wt. ESR LPA LPA X-Ray ID# Days Kgs Temp. Mm/hr PPD10 PPD1 Remarks S3101E 0 2.17 37.0 0 0.47 1.1 Negative 34 1.88 37.3 ND 0.85 1.4 ND 62 2.02 36.0 ND 1.3 1.5 ND → Time of Infection 28 2.09 38.0 2 1.3 3.7 Positive 56 1.92 37.2 20 5.6 9.1 Positive 84 1.81 37.5 8 4.7 5.6 Positive 121 DIED LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. Mm/hr 10 μg 1 μg Remarks 3144-B 0 2.05 36.7 0 0.87 1.8 Negative 34 1.86 37.6 ND 2.2 1.4 ND 62 1.87 36.5 ND 1.6 1.6 ND → Time of Infection 28 2.10 38.0 0 12 8.7 Positive 56 1.96 37.6 0 29.6 21.1 Positive 84 1.82 37.3 4 45.3 23.4 Positive 131 DIED

[0103] TABLE 2B MONKEYS IMMUNIZED WITH WHOLE HEAT-KILLED M. VACCAE (500 μg) INTRADERMAL LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. mm/hr 10 μg 1 μg Remarks 4080-B 0 2.05 37.1 1 1.1 0.77 Negative 34 1.97 38.0 ND 1.7 1.4 ND 62 2.09 36.7 ND 1.5 1.5 ND → Time of Infection 28 2.15 37.6 0 2.6 2.1 Negative 56 2.17 37.6 0 8.2 7.6 Negative 84 2.25 37.3 0 3.8 2.8 Negative 178 DIED LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. mm/hr 10 μg 1 μg Remarks 3586-B 0 2.29 37.0 0 1.1 1.4 Negative 34 2.22 38.0 ND 1.9 1.6 ND 62 2.39 36.0 ND 1.3 1.6 ND → Time of Infection 28 2.31 38.2 0 3.2 2.6 Negative 56 2.32 37.2 0 7.8 4.2 Negative 84 2.81 37.4 0 3.4 1.8 Negative 197 DIED

[0104] TABLE 2C MONKEYS IMMUNIZED WITH WHOLE HEAT-KILLED M. VACCAE (500 μg) INTRALUNG LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. mm/hr 10 μg 1 μg Remarks 3534-C 0 2.15 36.8 0 1.7 1.3 Negative 34 2.00 37.8 ND 4.4 1.4 ND 62 2.13 36.4 ND 3.2 1.9 ND → Time of Infection 28 2.38 37.7 0 1.9 2.6 Negative 56 2.42 37.8 0 5.3 4.7 Negative 84 2.46 37.1 1 3.1 3.2 Negative 210 No sign of lung disease Negative 3160-A 0 2.17 37.3 0 1.2 0.79 Negative 34 1.98 37.1 ND 3.9 7.8 ND 62 2.17 36.9 ND 1.7 2.4 ND → Time of Infection 28 2.38 37.7 0 1.9 2.6 Negative 56 2.42 37.8 0 5.3 4.7 Negative 84 2.46 37.1 1 3.1 3.2 Negative 210 Stable lung disease Positive

[0105] TABLE 2D MONKEYS IMMUNIZED WITH CULTURE FILTRATE (100 μg) INTRADERMAL LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. mm/hr 10 μg 1 μg Remarks 3564-B 0 2.40 37.2 0 1.4 1.4 Negative 34 2.42 38.1 ND 3.3 2.7 ND 62 2.31 37.1 ND 3.1 3.4 ND → Time of Infection 28 2.41 38.6 13 24 13.6 Negative 56 2.38 38.6 0 12.7 12.0 Negative 84 2.41 38.6 2 21.1 11.8 Positive 140 Died 3815-B 0 2.31 36.3 0 1.0 1.4 Negative 34 2.36 38.2 ND 1.9 2.0 ND 62 2.36 36.4 ND 3.7 2.8 ND → Time of Infection 28 2.45 37.8 0 2.1 3.3 Negative 56 2.28 37.3 4 8.0 5.6 Negative 84 2.32 37.4 0 1.9 2.2 Positive 210 Positive

[0106] TABLE 2E MONKEYS IMMUNIZED WITH CULTURE FILTRATE (100 μg) INTRALUNG LPA LPA Wt. ESR PPD PPD X-Ray ID# Days Kgs Temp. mm/hr 10 μg 1 μg Remarks 4425-A 0 2.05 36.0 0 0.35 1.2 Negative 34 2.0 37.6 ND 3.0 2.4 ND 62 2.11 37.6 ND 2.2 1.6 ND → Time of Infection 28 2.21 38.0 0 8.4 4.1 Negative 56 2.11 37.6 0 23.9 17.7 Negative 84 2.18 37.9 0 8.4 7.2 Positive 210 Stable lung disease Positive 2779-D 0 2.56 38.6 2 1.9 1.4 Negative 28 2.55 37.9 ND 0.78 1.1 ND 56 2.69 38.4 ND 1.3 1.5 ND → Time of Infection 56 2.25 39.0 24 ND ND Positive 96 Died

EXAMPLE 2 Effect of Immunization with M. vaccae on Asthma in Mice

[0107] This example illustrates that both heat-killed M. vaccae and DD-M. vaccae, when administered to mice via the intranasal route, are able to inhibit the development of an allergic immune response in the lungs. This was demonstrated in a mouse model of the asthma-like allergen specific lung disease. The severity of this allergic disease is reflected in the large numbers of eosinophils that accumulate in the lungs.

[0108] C57BL/6J mice were given 2 μg ovalbumin in 100 μl alum adjuvant by the intraperitoneal route at time 0 and 14 days, and subsequently given 100 μg ovalbumin in 50 μl phosphate buffered saline (PBS) by the intranasal route on day 28. The mice accumulated eosinophils in their lungs as detected by washing the airways of the anaesthetised mice with saline, collecting the washings (broncheolar lavage or BAL), and counting the numbers of eosinophils.

[0109] As shown in FIGS. 4A and B, groups of seven mice administered either 10 or 1000 μg of heat-killed M. vaccae (FIG. 4A), or 10, 100 or 200 μg of DD-M. vaccae (FIG. 4B) intranasally 4 weeks before intranasal challenge with ovalbumin, had reduced percentages of eosinophils in the BAL cells collected 5 days after challenge with ovalbumin compared to control mice. Control mice were given intranasal PBS. Live M. bovis BCG at a dose of 2×10⁵ colony forming units also reduced lung eosinophilia. The data in FIGS. 4A and B show the mean and SEM per group of mice.

[0110]FIGS. 4C and D show that mice given either 1000 μg of heat-killed M. vaccae (FIG. 4C) or 200 μg of DD-M. vaccae (FIG. 4D) intranasally as late as one week before challenge with ovalbumin had reduced percentages of eosinophils compared to control mice. In contrast, treatment with live BCG one week before challenge with ovalbumin did not inhibit the development of lung eosinophilia when compared with control mice.

[0111] As shown in FIG. 4E, immunization with either 1 mg of heat-killed M. vaccae or 200 μg of DD-M. vaccae, given either intranasally (i.n.) or subcutaneously (s.c.), reduced lung eosinophilia following challenge with ovalbumin when compared to control animals given PBS. In the same experiment, immunization with BCG of the Pasteur (BCG-P) and Connought (BCG-C) strains prior to challenge with ovalbumin also reduced the percentage of eosinophils in the BAL of mice.

[0112] Eosinophils are blood cells that are prominent in the airways in allergic asthma. The secreted products of eosinophils contribute to the swelling and inflammation of the mucosal linings of the airways in allergic asthma. The data shown in FIGS. 4A-E indicate that treatment with heat-killed M. vaccae or DD-M. vaccae reduces the accumulation of lung eosinophils, and may be useful in reducing inflammation associated with eosinophilia in the airways, nasal mucosal and upper respiratory tract. Administration of heat-killed M. vaccae or DD-M. vaccae may therefore reduce the severity of asthma and diseases that involve similar immune abnormalities, such as allergic rhinitis.

[0113] In addition, serum samples were collected from mice in the experiment described in FIG. 4E and antibodies to ovalbumin was measured by standard enzyme-linked immunoassay (EIA). As shown in Table 3 below, sera from mice infected with BCG had higher levels of ovalbumin specific IgG1 than sera from PBS controls. In contrast, mice immunized with M. vaccae or DD-M. vaccae had similar or lower levels of ovalbumin-specific IgG1. As IgG1 antibodies are characteristic of a Th2 immune response, these results are consistent with the suppressive effects of heat-killed M. vaccae and DD-M. vaccae on the asthma-inducing Th2 immune responses. TABLE 3 LOW ANTIGEN-SPECIFIC IgG1 SERUM LEVELS IN MICE IMMUNIZED WITH HEAT-KILLED M. VACCAE OR DD-M. VACCAE Serum IgG1 Treatment Group Mean SEM M.vaccae i.n. 185.00 8.3 M. vaccae s.c. 113.64 8.0 DD-M. vaccae i.n. 96.00 8.1 DD-M. vaccae s.c. 110.00 4.1 BCG, Pasteur 337.00 27.2 BCG, Connaught 248.00 46.1 PBS 177.14 11.4

EXAMPLE 3 Preparation and Immune Modulating Properties of Delipidated and Deglycolipidated (DD-) M. vaccae

[0114] This example illustrates the processing of different constituents of M. vaccae and their immune modulating properties.

[0115] Heat-killed M. vaccae and M. vaccae culture filtrate

[0116]M. vaccae (ATCC Number 15483) was cultured in sterile Medium 90 (yeast extract, 2.5 g/l; tryptone, 5 g/l; glucose 1 g/l) at 37° C. The cells were harvested by centrifugation, and transferred into sterile Middlebrook 7H9 medium (Difco Laboratories, Detroit, Mich., USA) with glucose at 37° C. for one day. The medium was then centrifuged to pellet the bacteria, and the culture filtrate removed. The bacterial pellet was resuspended in phosphate buffered saline at a concentration of 10 mg/ml, equivalent to 10¹⁰ M. vaccae organisms per ml. The cell suspension was then autoclaved for 15 min at 120° C. The culture filtrate was passaged through a 0.45 μM filter into sterile bottles.

[0117] Delipidated and Deglycolipidated (DD-) M. vaccae and Compositional Analysis

[0118] To prepare delipidated M. vaccae, the autoclaved M. vaccae was pelleted by centrifugation, the pellet washed with water and collected again by centrifugation and then freeze-dried. Freeze-dried M. vaccae was treated with chloroform/methanol (2:1) for 60 mins at room temperature to extract lipids, and the extraction was repeated once. The delipidated residue from chloroform/methanol extraction was further treated with 50% ethanol to remove glycolipids by refluxing for two hours. The 50% ethanol extraction was repeated two times. The pooled 50% ethanol extracts were used as a source of M. vaccae glycolipids (see below). The residue from the 50% ethanol extraction was freeze-dried and weighed. The amount of delipidated and deglycolipidated M. vaccae prepared was equivalent to 11.1% of the starting wet weight of M. vaccae used. For bioassay, the delipidated and deglycolipidated M. vaccae, referred to as DD-M. vaccae, was resuspended in phosphate-buffered saline by sonication, and sterilized by autoclaving.

[0119] The compositional analyses of heat-killed M. vaccae and DD-M. vaccae are presented in Table 4. Major changes are seen in the fatty acid composition and amino acid composition of DD-M. vaccae as compared to the insoluble fraction of heat-killed M. vaccae. The data presented in Table 4 shows that the insoluble fraction of heat-killed M. vaccae contains 10% w/w of lipid, and the total amino acid content is 2750 nmoles/mg, or approximately 33% w/w. DD-M. vaccae contains 1.3% w/w of lipid and 4250 nmoles/mg amino acids, which is approximately 51% w/w. TABLE 4 Compositional analyses of heat-killed M. vaccae and DD-M. vaccae M. vaccae DD-M. vaccae Monosaccharide composition sugar alditol Inositol 3.2% 1.7% Ribitol* 1.7% 0.4% Arabinitol 22.7% 27.0% Mannitol 8.3% 3.3% Galactitol 11.5% 12.6% Glucitol 52.7% 55.2% Fatty acid composition Fatty acid C14:0 3.9% 10.0% C16:0 21.1% 7.3% C16:1 14.0% 3.3% C18:0 4.0% 1.5% C18:1* 1.2% 2.7% C18:1w9 20.6% 3.1% C18:1w7 12.5% 5.9% C22:0 12.1% 43.0% C24:1* 6.5% 22.9%

[0120] The insoluble fraction of heat-killed M. vaccae contains 10% w/w of lipid, and DD-M. vaccae contains 1.3% w/w of lipid. Amino Acid Composition nmoles/mg M. vaccae DD-M. vaccae ASP 231 361 THR 170 266 SER 131 199 GLU 319 505 PRO 216 262 GLY 263 404 ALA 416 621 CYS* 24 26 VAL 172 272 MET* 72 94 ILE 104 171 LEU 209 340 TYR 39 75 PHE 76 132 G1cNH2 5 6 HIS 44 77 LYS 108 167 ARG 147 272

[0121] The total amino acid content of the insoluble fraction of heat-killed M. vaccae is 2750 nmoles/mg, or approximately 33% w/w. The total amino acid content of DD-M. vaccae is 4250 nmoles/mg, or approximately 51% w/w.

[0122] Comparison of composition of DD-M. vaccae with delipidated and deglycolipidated forms of M. tuberculosis and M. smegmatis

[0123] Delipidated and deglycolipidated M. tuberculosis and M. smegmatis were prepared using the procedure described above for delipidated and deglycolipidated M. vaccae. As indicated in Table 5, the profiles of the percentage composition of amino acids in DD-M. vaccae, DD-M. tuberculosis and DD-M. smegmatis showed no significant differences. However, the total amount of protein varied—the two batches of DD-M. vaccae contained 34% and 55% protein, whereas DD-M. tuberculosis and DD-M. smegmatis contained 79% and 72% protein, respectively. TABLE 5 Amino Acid Composition of Delipidated and Deglycolipidated Mycobacteria DD- DD- Amino M.vaccae M.vaccae DD- DD- Acid Batch 1 Batch 2 M. smegmatis M. tuberculosis Asp 9.5 9.5 9.3 9.1 Thr 6.0 5.9 5.0 5.3 Ser 5.3 5.3 4.2 3.3 Glu 11.1 11.2 11.1 12.5 Pro 6.1 5.9 7.5 5.2 Gly 9.9 9.7 9.4 9.8 Ala 14.6 14.7 14.6 14.2 Cys 0.5 0.5 0.3 0.5 Val 6.3 6.4 7.2 7.8 Met 1.9 1.9 1.9 1.9 Ile 3.6 3.5 4.1 4.7 Leu 7.8 7.9 8.2 8.3 Tyr 1.4 1.7 1.8 1.8 Phe 4.2 4.0 3.2 3.0 His 1.9 1.8 2.0 1.9 Lys 4.1 4.0 4.1 4.2 Arg 5.8 5.9 6.2 6.4 Total % 55.1 33.8 72.1 78.5 Protein

[0124] Analysis of the monosaccharide composition showed significant differences between DD-M. vaccae, and DD-M. tuberculosis and DD-M. smegmatis. The monosaccharide composition of two batches of DD-M. vaccae was the same and differed from that of DD-M. tuberculosis and M. smegmatis. Specifically, DD-M. vaccae was found to contain free glucose while both DD-M. tuberculosis and M. smegmatis contain glycerol, as shown in Table 6. TABLE 6 Alditol Acetate wt % mol % DD-M. vaccae Batch 1 Inositol 0.0 0.0 Arabinose 54.7 59.1 Mannose 1.7 1.5 Glucose 31.1 28.1 Galactose 12.5 11.3 100.0 100.0 Batch 2 Inositol 0.0 0.0 Arabinose 51.0 55.5 Mannose 2.0 1.8 Glucose 34.7 31.6 Galactose 12.2 11.1 100.0 100.0 DD-M. smeg Inositol 0.0 0.0 Glycerol 15.2 15.5 Arabinose 69.3 70.7 Xylose 3.9 4.0 Mannose 2.2 1.9 Glucose 0.0 0.0 Galactose 9.4 8.0 100.0 100.0 DD-M. tb Inositol 0.0 0.0 Glycerol 9.5 9.7 Arabinose 69.3 71.4 Mannose 3.5 3.0 Glucose 1.5 1.3 Galactose 12.4 10.7 96.2 96.0

[0125]M. vaccae glycolipids

[0126] The pooled 50% ethanol extracts described above were dried by rotary evaporation, redissolved in water and freeze-dried. The amount of glycolipid recovered was 1.2% of the starting wet weight of M. vaccae used. For bioassay, the glycolipids were dissolved in phosphate-buffered saline.

[0127] Stimulation of Cytokine Synthesis

[0128] Whole heat-killed M. vaccae and DD-M. vaccae were shown to have different cytokine stimulation properties. The stimulation of a Th1 immune response is enhanced by the production of interleukin-12 (IL-12) from macrophages. The ability of different M. vaccae preparations to stimulate IL-12 production was demonstrated as follows.

[0129] A group of C57BL/6J mice were injected intraperitoneally with DIFCO thioglycolate and, after three days, peritoneal macrophages were collected and placed in cell culture with interferon-gamma for three hours. The culture medium was replaced and various concentrations of whole heat-killed M. vaccae, heat-killed M. vaccae which was lyophilised and reconstituted for use in phospate-buffered saline, DD-M. vaccae, or M. vaccae glycolipids were added. After three days at 37° C., the culture supernatants were assayed for the presence of IL-12 produced by macrophages. As shown in FIG. 1, all the M. vaccae preparations stimulated the production of IL-12 from macrophages.

[0130] By contrast, these same M. vaccae preparations were examined for the ability to stimulate interferon-gamma production from Natural Killer (NK) cells. Spleen cells were prepared from Severe Combined Immunodeficient (SCID) mice. These populations contain 75-80% NK cells. The spleen cells were incubated at 37° C. in culture with different concentrations of heat-killed M. vaccae, DD-M. vaccae, and M. vaccae glycolipids. The data shown in FIG. 2 demonstrated that, while heat-killed M. vaccae and M. vaccae glycolipids stimulate production of interferon-gamma, DD-M. vaccae stimulated relatively less interferon gamma. The combined data from FIGS. 1 and 2 indicate that compared with M. vaccae, DD-M. vaccae was a better stimulator of IL-12 than interferon gamma.

[0131] These findings demonstrate that removal of the lipid glycolipid constituents from M. vaccae results in the removal of molecular components that stimulate interferon-gamma from NK cells, thereby effectively eliminating an important cell source of a cytokine that has numerous harmful side-effects. DD-M. vaccae thus retains Th1 immune enhancing capacity by stimulating IL-12 production, but has lost the non-specific effects that may come through the stimulation of interferon-gamma production from NK cells.

[0132] The adjuvant effects of a number of recombinant antigens were determined by measuring stimulation of IL-12 secretion from murine peritoneal macrophages. The cloning and purification of the recombinant proteins are described in Examples 4-10. Recombinant proteins that exhibited adjuvant properties are listed in Table 7. TABLE 7 Recombinant proteins that exhibit adjuvant properties Mouse strain Antigen C57BL-6 Balb/C GVs-3 + + GVc-4P + + GV-5 + + GV-5P + + GVc-7 + + GV-22B + ND GV-27 + + GV-27A + + GV-27B + + GV-42 + ND DD. M. vaccae + +

[0133] Proteins in DD-M. vaccae as non-specific immune amplifiers

[0134] In subsequent experiments, the five proteins GV27, 27A, 27B, 23 and 45 were used as non-specific immune amplifiers with ovalbumin antigen to immunize mice as described below in Example 4. As shown in FIG. 5, 50 μg of any one of the recombinant proteins GV27, 27A, 27B, 23 and 45, when injected with 50-100 μg of ovalbumin, demonstrated adjuvant properties in being able to generate cytotoxic cells to ovalbumin.

EXAMPLE 4 The Non-specific Immune Amplifying Properties of Heat-killed M. vaccae, M. vaccae Culture filtrate and DD-M. vaccae

[0135] This example illustrates the non-specific immune amplifying or ‘adjuvant’ properties of whole heat-killed M. vaccae, DD-M. vaccae and M. vaccae culture filtrate.

[0136]M. vaccae bacteria was cultured, pelleted and autoclaved as described in Example 1. Culture filtrates of live M. vaccae refer to the supernatant from 24 h cultures of M. vaccae in 7H9 medium with glucose. DD-M. vaccae was prepared as described in Example 3.

[0137] Killed M. vaccae, DD-M. vaccae and M. vaccae culture filtrate were tested for adjuvant activity in the generation of cytotoxic T cell immune response to ovalbumin, a structurally unrelated protein, in the mouse. This anti-ovalbumin-specific cytotoxic response was detected as follows. Groups of C57BL/6 mice were immunized by the intraperitoneal injection of 100 μg of ovalbumin with the following test adjuvants: heat-killed M. vaccae; DD-M. vaccae; DD-M. vaccae with proteins extracted with SDS; the SDS protein extract treated with Pronase (an enzyme which degrades protein); and either heat-killed M. vaccae, heat-killed M. bovis BCG, M. phlei, M. smegmatis or M. vaccae culture filtrate. After 10 days, spleen cells were stimulated in vitro for a further 6 days with E.G7 cells which are EL4 cells (a C57BL/6-derived T cell lymphoma) transfected with the ovalbumin gene and thus express ovalbumin. The spleen cells were then assayed for their ability to kill non-specifically EL4 target cells or to kill specifically the E.G7 ovalbumin expressing cells. Killing activity was detected by the release of ⁵¹Chromium with which the EL4 and E.G7 cells have been labelled (100 mCi per 2×10⁶), prior to the killing assay. Killing or cytolytic activity is expressed as % specific lysis using the formula: $\frac{{{cpm}\quad {in}\quad {test}\quad {cultures}} - {{cpm}\quad {in}\quad {control}\quad {cultures}}}{{{total}\quad {cpm}} - {{cpm}\quad {in}\quad {control}\quad {cultures}}} \times 100\%$

[0138] It is generally known that ovalbumin-specific cytotoxic cells are generated only in mice immunized with ovalbumin with an adjuvant but not in mice immunized with ovalbumin alone.

[0139] The diagrams that make up FIG. 3 show the effect of various M. vaccae derived adjuvant preparations on the generation of cytotoxic T cells to ovalbumin in C57BL/6 mice. As shown in FIG. 3A, cytotoxic cells were generated in mice immunized with (i) 10 μg, (ii) 100 μg or (iii) 1 mg of autoclaved M. vaccae or (iv) 75 μg of M. vaccae culture filtrate. FIG. 3B shows that cytotoxic cells were generated in mice immunized with (i) 1 mg whole autoclaved M. vaccae or (ii) 100 μg DD-M. vaccae. As shown in FIG. 3C(i), cytotoxic cells were generated in mice immunized with 1 mg heat-killed M. vaccae; FIG. 3C(ii) shows the active material in M. vaccae soluble proteins extracted with SDS from DD-M. vaccae. FIG. 3C(iii) shows that active material in the adjuvant preparation of FIG. 3C(ii) was destroyed by treatment with the proteolytic enzyme Pronase. By way of comparison, 100 μg of the SDS-extracted proteins had significantly stronger immune-enhancing ability (FIG. 3C(ii)) than did 1 mg heat-killed M. vaccae (FIG. 3C(i)). Mice immunized with 1 mg heat-killed M. vaccae (FIG. 3D(i)) generated cytotoxic cells to ovalbumin, but mice immunized separately with 1 mg heat-killed M. tuberculosis (FIG. 3D(ii)), 1 mg M. bovis BCG (FIG. 3D(iii)), 1 mg M. phlei (FIG. 3D(iv)), or 1 mg M. smegmatis (FIG. 3D(v)) failed to generate cytotoxic cells.

[0140] The significance of these findings is that heat-killed M. vaccae and DD-M. vaccae have adjuvant properties not seen in other mycobacteria. Further, delipidation and deglycolipidation of M. vaccae removes an NK cell-stimulating activity but does not result in a loss of T cell-stimulating activity.

[0141] In subsequent studies, more of the SDS-extracted proteins described above were prepared by preparative SDS-PAGE on a BioRad Prep Cell (Hercules, Calif.). Fractions corresponding to molecular weight ranges were precipitated by trichloroacetic acid to remove SDS before assaying for adjuvant activity in the anti-ovalbumin-specific cytotoxic response assay in C57BL/6 mice as described above. The adjuvant activity was highest in the 60-70 kDa fraction. The most abundant protein in this size range was purified by SDS-PAGE blotted on to a polyvinylidene difluoride (PVDF) membrane and then sequenced. The sequence of the first ten amino acid residues is provided in SEQ ID NO:76. Comparison of this sequence with those in the gene bank as described above, revealed homology to the heat shock protein 65 (GroEL) gene from M. tuberculosis, indicating that this protein is an M. vaccae member of the GroEL family.

[0142] An expression library of M. vaccae genomic DNA in BamH1-lambda ZAP-Express (Stratagene) was screened using sera from cynomolgous monkeys immunized with M. tuberculosis secreted proteins prepared as described above. Positive plaques were identified using a colorimetric system. These plaques were re-screened until plaques were pure following standard procedures. pBK-CMV phagemid 2-1 containing an insert was excised from the lambda ZAP-Express (Stratagene) vector in the presence of ExAssist helper phage following the manufacturer's protocol. The base sequence of the 5′ end of the insert of this clone, hereinafter referred to as GV-27, was determined using Sanger sequencing with fluorescent primers on Perkin Elmer/Applied Biosystems Division automatic sequencer. The determined nucleotide sequence of the partial M. vaccae GroEL-homologue clone GV-27 is provided in SEQ ID NO:77 and the predicted amino acid sequence in SEQ ID NO:78. This clone was found to have homology to M. tuberculosis GroEL.

[0143] A partial sequence of the 65 kDa heat shock protein of M. vaccae has been published by Kapur et al. (Arch. Pathol. Lab. Med. 119:131-138, 1995). However, this sequence did not overlap with the GV-27 sequence provided herein. The nucleotide sequence of the Kapur et al. fragment is shown in SEQ ID NO:79 and the predicted amino acid sequence in SEQ ID NO:80.

[0144] In subsequent studies, an extended DNA sequence (full-length except for the predicted 51 terminal residues) for GV-27 was obtained (SEQ ID NO: 113). The corresponding predicted amino acid sequence is provided in SEQ ID NO: 114. Further studies led to the isolation of the full-length DNA sequence for GV-27 (SEQ ID NO: 159). The corresponding predicted amino acid sequence is provided in SEQ ID NO: 160. This sequence shows 93.7% identity to the M. tuberculosis GroEL sequence. Two peptide fragments, comprising the N-terminal sequence (hereinafter referred to as GV-27A) and the carboxy terminal sequence of GV-27 (hereinafter referred to as GV-27B) were prepared using techniques well known in the art. The nucleotide sequences for GV-27A and GV-27B are provided in SEQ ID NO: 115 and 116, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO: 117 and 118. Subsequent studies led to the isolation of an extended DNA sequence for GV-27B. This sequence is provided in SEQ ID NO: 161, with the corresponding amino acid sequence being provided in SEQ ID NO: 162. The sequence of GV-27A shows 95.8% identity to the published M. tuberculosis GroEL sequence and contains the M. vaccae sequence of Kapur et al. discussed above. The sequence of GV-27B is about 92.2% identical to the published M. tuberculosis sequence.

[0145] Following the same protocol as for the isolation of GV-27, pBK-CMV phagemid 3-1 was isolated. The antigen encoded by this DNA was named GV-29. The determined nucleotide sequences of the 5′ and 3′ ends of the gene are provided in SEQ ID NO: 163 and 164, respectively, with the predicted corresponding amino acid sequences being provided in SEQ ID NO: 165 and 166 respectively. GV-29 showed homology to yeast urea amidolyase. The determined DNA sequence for the full-length gene encoding GV-29 is provided in SEQ ID NO: 198, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 199. The DNA encoding GV-29 was sub-cloned into the vector pET16 (Novagen, Madison, Wis.) for expression and purification according to standard protocols.

EXAMPLE 5 Purification and Characterization of Polypeptides from M. vaccae Culture Filtrate

[0146] This example illustrates the preparation of M. vaccae soluble proteins from culture filtrate. Unless otherwise noted, all percentages in the following example are weight per volume.

[0147]M. vaccae (ATCC Number 15483) was cultured in sterile Medium 90 at 37° C. The cells were harvested by centrifugation, and transferred into sterile Middlebrook 7H9 medium with glucose at 37° C. for one day. The medium was then centrifuged (leaving the bulk of the cells) and filtered through a 0.45 μm filter into sterile bottles.

[0148] The culture filtrate was concentrated by lyophilization, and redissolved in MilliQ water. A small amount of insoluble material was removed by filtration through a 0.45 m membrane. The culture filtrate was desalted by membrane filtration in a 400 ml Amicon stirred cell which contained a 3,000 Da molecular weight cut-off (MWCO) membrane. The pressure was maintained at 50 psi using nitrogen gas. The culture filtrate was repeatedly concentrated by membrane filtration and diluted with water until the conductivity of the sample was less than 1.0 mS. This procedure reduced the 20 l volume to approximately 50 ml. Protein concentrations were determined by the Bradford protein assay (Bio-Rad, Hercules, Calif., USA).

[0149] The desalted culture filtrate was fractionated by ion exchange chromatography on a column of Q-Sepharose (Pharmacia Biotech, Uppsala, Sweden) (16×100 mm) equilibrated with 10 mM Tris HCl buffer pH 8.0. Polypeptides were eluted with a linear gradient of NaCl from 0 to 1.0 M in the above buffer system. The column eluent was monitored at a wavelength of 280 nm.

[0150] The pool of polypeptides eluting from the ion exchange column was concentrated in a 400 ml Amicon stirred cell which contained a 3,000 Da MWCO membrane. The pressure was maintained at 50 psi using nitrogen gas. The polypeptides were repeatedly concentrated by membrane filtration and diluted with 1% glycine until the conductivity of the sample was less than 0.1 mS.

[0151] The purified polypeptides were then fractionated by preparative isoelectric focusing in a Rotofor device (Bio-Rad, Hercules, Calif., USA). The pH gradient was established with a mixture of Ampholytes (Pharmacia Biotech) comprising 1.6% pH 3.5-5.0 Ampholytes and 0.4% pH 5.0-7.0 Ampholytes. Acetic acid (0.5 M) was used as the anolyte, and 0.5 M ethanolamine as the catholyte. Isoelectric focusing was carried out at 12 W constant power for 6 hours, following the manufacturer's instructions. Twenty fractions were obtained.

[0152] Fractions from isoelectric focusing were combined, and the polypeptides were purified on a Vydac C4 column (Separations Group, Hesperia, Calif., USA) 300 Angstrom pore size, 5 micron particle size (10×250 mm). The polypeptides were eluted from the column with a linear gradient of acetonitrile (0-80% v/v) in 0.05% (v/v) trifluoroacetic acid (TFA). The flow-rate was 2.0 ml/min and the HPLC eluent was monitored at 220 nm. Fractions containing polypeptides were collected to maximize the purity of the individual samples.

[0153] Relatively abundant polypeptide fractions were rechromatographed on a Vydac C4 column (Separations Group) 300 Angstrom pore size, 5 micron particle size (4.6×250 mm). The polypeptides were eluted from the column with a linear gradient from 20-60% (v/v) of acetonitrile in 0.05% (v/v) TFA at a flow-rate of 1.0 ml/min. The column eluent was monitored at 220 nm. Fractions containing the eluted polypeptides were collected to maximise the purity of the individual samples. Approximately 20 polypeptide samples were obtained and they were analysed for purity on a polyacrylamide gel according to the procedure of Laemmli (Laemmli, U. K., Nature 277:680-685, 1970).

[0154] The polypeptide fractions which were shown to contain significant contamination were further purified using a Mono Q column (Pharmacia Biotech) 10 micron particle size (5×50 mm) or a Vydac Diphenyl column (Separations Group) 300 Angstrom pore size, 5 micron particle size (4.6×250 mm). From a Mono Q column, polypeptides were eluted with a linear gradient from 0-0.5 M NaCl in 10 mM Tris HCl pH 8.0. From a Vydac Diphenyl column, polypeptides were eluted with a linear gradient of acetonitrile (20-60% v/v) in 0.1% TFA. The flow-rate was 1.0 ml/min and the column eluent was monitored at 220 nm for both columns. The polypeptide peak fractions were collected and analysed for purity on a 15% polyacrylamide gel as described above.

[0155] For sequencing, the polypeptides were individually dried onto Biobrene™ (Perkin Elmer/Applied BioSystems Division, Foster City, Calif.)-treated glass fiber filters. The filters with polypeptide were loaded onto a Perkin Elmer/Applied BioSystems Procise 492 protein sequencer and the polypeptides were sequenced from the amino terminal end using traditional Edman chemistry. The amino acid sequence was determined for each polypeptide by comparing the retention time of the PTH amino acid derivative to the appropriate PTH derivative standards.

[0156] Internal sequences were also determined on some antigens by digesting the antigen with the endoprotease Lys-C, or by chemically cleaving the antigen with cyanogen bromide. Peptides resulting from either of these procedures were separated by reversed-phase HPLC on a Vydac C18 column using a mobile phase of 0.05% (v/v) trifluoroacetic acid with a gradient of acetonitrile containing 0.05% (v/v) TFA (1%/min). The eluent was monitored at 214 nm. Major internal peptides were identified by their UV absorbance, and their N-terminal sequences were determined as described above.

[0157] Using the procedures described above, six soluble M. vaccae antigens, designated GVc-1, GVc-2, GVc-7, GVc-13, GVc-20 and GVc-22, were isolated. Determined N-terminal and internal sequences for GVc-1 are shown in SEQ ID NO: 1, 2 and 3, respectively; the N-terminal sequence for GVc-2 is shown in SEQ ID NO: 4; internal sequences for GVc-7 are shown in SEQ ID NO: 5-8; internal sequences for GVc-13 are shown in SEQ ID NO: 9-11; internal sequence for GVc-20 is shown in SEQ ID NO: 12; and N-terminal and internal sequences for GVc-22 are shown in SEQ ID NO:56-59, respectively. Each of the internal peptide sequences provided herein begins with an amino acid residue which is assumed to exist in this position in the polypeptide, based on the known cleavage specificity of cyanogen bromide (Met) or Lys-C (Lys).

[0158] Three additional polypeptides, designated GVc-16, GVc-18 and GVc-21, were isolated employing a preparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) purification step in addition to the preparative isoelectric focusing procedure described above. Specifically, fractions comprising mixtures of polypeptides from the preparative isoelectric focusing purification step previously described, were purified by preparative SDS-PAGE on a 15% polyacrylamide gel. The samples were dissolved in reducing sample buffer and applied to the gel. The separated proteins were transferred to a polyvinylidene difluoride (PVDF) membrane by electroblotting in 10 mM 3-(cyclohexylamino)-1-propanesulfonic acid (CAPS) buffer pH 11 containing 10% (v/v) methanol. The transferred protein bands were identified by staining the PVDF membrane with Coomassie blue. Regions of the PVDF membrane containing the most abundant polypeptide species were cut out and directly introduced into the sample cartridge of the Perkin Elmer/Applied BioSystems Procise 492 protein sequencer. Protein sequences were determined as described above. The N-terminal sequences for GVc-16, GVc-18 and GVc-21 are provided in SEQ ID NO: 13, 14 and 15, respectively.

[0159] Additional antigens, designated GVc-12, GVc-14, GVc-15, GVc-17 and GVc-19, were isolated employing a preparative SDS-PAGE purification step in addition to the chromatographic procedures described above. Specifically, fractions comprising a mixture of antigens from the Vydac C4 HPLC purification step previously described were fractionated by preparative SDS-PAGE on a polyacrylamide gel. The samples were dissolved in non-reducing sample buffer and applied to the gel. The separated proteins were transferred to a PVDF membrane by electroblotting in 10 mM CAPS buffer, pH 11 containing 10% (v/v) methanol. The transferred protein bands were identified by staining the PVDF membrane with Coomassie blue. Regions of the PVDF membrane containing the most abundant polypeptide species were cut out and directly introduced into the sample cartridge of the Perkin Elmer/Applied BioSystems Procise 492 protein sequencer. Protein sequences were determined as described above. The determined N-terminal sequences for GVc-12, GVc-14, GVc-15, GVc-17 and GVc-19 are provided in SEQ ID NO: 16-20, respectively.

[0160] All of the above amino acid sequences were compared to known amino acid sequences in the SwissProt data base (version R32) using the GeneAssist system. No significant homologies to the amino acid sequences GVc-2 to GVc-22 were obtained. The amino acid sequence for GVc-1 was found to bear some similarity to sequences previously identified from M. bovis and M. tuberculosis. In particular, GVc-1 was found to have some homology with M. tuberculosis MPT83, a cell surface protein, as well as MPT70. These proteins form part of a protein family (Harboe et al., Scand. J. Immunol. 42:46-51, 1995).

[0161] Subsequent studies led to the isolation of DNA sequences for GVc-13, GVc-14 and GVc-22 (SEQ ID NO: 142, 107 and 108, respectively). The corresponding predicted amino acid sequences for GVc-13, GVc-14 and GVc-22 are provided in SEQ ID NO: 143, 109 and 110, respectively. The determined DNA sequence for the full length gene encoding GVc-13 is provided in SEQ ID NO: 195, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 196.

[0162] Further studies with GVc-22 suggested that only a part of the gene encoding GVc-22 was cloned. When sub-cloned into the expression vector pET16, no protein expression was obtained. Subsequent screening of the M. vaccae BamHI genomic DNA library with the incomplete gene fragment led to the isolation of the complete gene encoding GVc-22. To distinguish between the full-length clone and the partial GVc-22, the antigen expressed by the full-length gene was called GV-22B. The determined nucleotide sequence of the gene encoding GV-22B and the predicted amino acid sequence are provided in SEQ ID NO: 144 and 145 respectively.

[0163] Amplifications primers AD86 and AD112 (SEQ ID NO: 60 and 61, respectively) were designed from the amino acid sequence of GVc-1 (SEQ ID NO: 1) and the M. tuberculosis MPT70 gene sequence. Using these primers, a 310 bp fragment was amplified from M. vaccae genomic DNA and cloned into EcoRV-digested vector pBluescript II SK⁺ (Stratagene). The sequence of the cloned insert is provided in SEQ ID NO: 62. The insert of this clone was used to screen a M. vaccae genomic DNA library constructed in lambda ZAP-Express (Stratgene, La Jolla, Calif.). The clone isolated contained an open reading frame with homology to the M. tuberculosis antigen MPT83 and was re-named GV-1/83. This gene also had homology to the M. bovis antigen MPB83. The determined nucleotide sequence and predicted amino acid sequences are provided in SEQ ID NO: 146 and 147 respectively.

[0164] From the amino acid sequences provided in SEQ ID NO: 1 and 2, degenerate oligonucleotides EV59 and EV61 (SEQ ID NO: 148 and 149 respectively) were designed. Using PCR, a 100 bp fragment was amplified, cloned into plasmid pBluescript II SK⁺ and sequenced (SEQ ID NO: 150) following standard procedures (Maniatis). The cloned insert was used to screen a M. vaccae genomic DNA library constructed in lambda ZAP-Express. The clone isolated had homology to M. tuberculosis antigen MPT70 and M. bovis antigen MPB70, and was named GV-1/70. The determined nucleotide sequence and predicted amino acid sequence for GV-1/70 are provided in SEQ ID NO: 151 and 152, respectively.

[0165] For expression and purification, the genes encoding GV1/83, GV1/70, GVc-13, GVc-14 and GV-22B were sub-cloned into the expression vector pET16 (Novagen, Madison, Wis.). Expression and purification were carried out according to the manufacturer's protocol.

[0166] The purified polypeptides were screened for the ability to induce T-cell proliferation and IFN-γ in peripheral blood cells from immune human donors. These donors were known to be PPD (purified protein derivative from M. tuberculosis) skin test positive and their T cells were shown to proliferate in response to PPD. Donor PBMCs and crude soluble proteins from M. vaccae culture filtrate were cultured in medium comprising RPMI 1640 supplemented with 10% (v/v) autologous serum, penicillin (60 mg/ml), streptomycin (100 mg/ml), and glutamine (2 mM).

[0167] After 3 days, 50 μl of medium was removed from each well for the determination of IFN-γ levels, as described below. The plates were cultured for a further 4 days and then pulsed with 1 mCi/well of tritiated thymidine for a further 18 hours, harvested and tritium uptake determined using a scintillation counter. Fractions that stimulated proliferation in both replicates two-fold greater than the proliferation observed in cells cultured in medium alone were considered positive.

[0168] IFN-γ was measured using an enzyme-linked immunosorbent assay (ELISA). ELISA plates were coated with a mouse monoclonal antibody directed to human IFN-gamma (Endogen, Wobural, Mass.) 1 mg/ml phosphate-buffered saline (PBS) for 4 hours at 4° C. Wells were blocked with PBS containing 0.2% Tween 20 for 1 hour at room temperature. The plates were then washed four times in PBS/0.2% Tween 20, and samples diluted 1:2 in culture medium in the ELISA plates were incubated overnight at room temperature. The plates were again washed, and a biotinylated polyclonal rabbit anti-human IFN-γ serum (Endogen), diluted to 1 mg/ml in PBS, was added to each well. The plates were then incubated for 1 hour at room temperature, washed, and horseradish peroxidase-coupled avidin A (Vector Laboratories, Burlingame, Calif.) was added at a 1:4,000 dilution in PBS. After a further 1 hour incubation at room temperature, the plates were washed and orthophenylenediamine (OPD) substrate added. The reaction was stopped after 10 min with 10% (v/v) HCl. The optical density (OD) was determined at 490 nm. Fractions that resulted in both replicates giving an OD two-fold greater than the mean OD from cells cultured in medium alone were considered positive.

[0169] Examples of polypeptides containing sequences that stimulate peripheral blood mononuclear cells (PBMC) T cells to proliferate and produce IFN-γ are shown in Table 8, wherein (−) indicates a lack of activity, (±) indicates polypeptides having a result less than twice higher than background activity of control media, (+) indicates polypeptides having activity two to four times above background, and (++) indicates polypeptides having activity greater than four times above background. TABLE 8 Examples of Polypeptides Stimulating Human Peripheral Blood Mononuclear Cells Antigen Proliferation IFN-γ GVc-1 ++ +/− GVc-2 + ++ GVc-7 +/− − GVc-13 + ++ GVc-14 ++ + GVc-15 + + GVc-20 + +

EXAMPLE 6 Purification and Characterisation of Polypeptides from M. vaccae Culture Filtrate by 2-Dimensional Polyacrylamide Gel Electrophoresis

[0170]M. vaccae soluble proteins were isolated from culture filtrate using 2-dimensional polyacrylamide gel electrophoresis as described below. Unless otherwise noted, all percentages in the following example are weight per volume.

[0171]M. vaccae (ATCC Number 15483) was cultured in sterile Medium 90 at 37° C. M. tuberculosis strain H37Rv (ATCC number 27294) was cultured in sterile Middlebrook 7H9 medium with Tween 80 and oleic acid/albumin/dextrose/catalase additive (Difco Laboratories, Detroit, Mich.). The cells were harvested by centrifugation, and transferred into sterile Middlebrook 7H9 medium with glucose at 37° C. for one day. The medium was then centrifuged (leaving the bulk of the cells) and filtered through a 0.45 μm filter into sterile bottles. The culture filtrate was concentrated by lyophilization, and redissolved in MilliQ water. A small amount of insoluble material was removed by filtration through a 0.45 μm membrane filter.

[0172] The culture filtrate was desalted by membrane filtration in a 400 ml Amicon stirred cell which contained a 3,000 Da MWCO membrane. The pressure was maintained at 60 psi using nitrogen gas. The culture filtrate was repeatedly concentrated by membrane filtration and diluted with water until the conductivity of the sample was less than 1.0 mS. This procedure reduced the 20 l volume to approximately 50 ml. Protein concentrations were determined by the Bradford protein assay (Bio-Rad, Hercules, Calif., USA).

[0173] The desalted culture filtrate was fractionated by ion exchange chromatography on a column of Q-Sepharose (Pharmacia Biotech) (16×100 mm) equilibrated with 10 M TrisHCl buffer pH 8.0. Polypeptides were eluted with a linear gradient of NaCl from 0 to 1.0 M in the above buffer system. The column eluent was monitored at a wavelength of 280 nm.

[0174] The pool of polypeptides eluting from the ion exchange column were fractionated by preparative 2-D gel electrophoresis. Samples containing 200-500 μg of polypeptide were made 8M in urea and applied to polyacrylamide isoelectric focusing rod gels (diameter 2 mm, length 150 mm, pH 5-7). After the isoelectric focusing step, the first dimension gels were equilibrated with reducing buffer and applied to second dimension gels (16% polyacrylamide). FIGS. 4A and 4B are the 2-D gel patterns observed with M. vaccae culture filtrate and M. tuberculosis H37Rv culture filtrate, respectively. Polypeptides from the second dimension separation were transferred to PVDF membranes by electroblotting in 10 mM CAPS buffer pH 11 containing 10% (v/v) methanol. The PVDF membranes were stained for protein with Coomassie blue. Regions of PVDF containing polypeptides of interest were cut out and directly introduced into the sample cartridge of the Perkin Elmer/Applied BioSystems Procise 492 protein sequencer. The polypeptides were sequenced from the amino terminal end using traditional Edman chemistry. The amino acid sequence was determined for each polypeptide by comparing the retention time of the PTH amino acid derivative to the appropriate PTH derivative standards. Using these procedures, eleven polypeptides, designated GVs-1, GVs-3, GVs-4, GVs-5, GVs-6, GVs-8, GVs-9, GVs-10, GVs-11, GV-34 and GV-35 were isolated. The determined N-terminal sequences for these polypeptides are shown in SEQ ID NO: 21-29, 63 and 64, respectively. Using the purification procedure described above, more protein was purified to extend the amino acid sequence previously obtained for GVs-9. The extended amino acid sequence for GVs-9 is provided in SEQ ID NO:65. Further studies resulted in the isolation of the DNA sequences for GVs-9 (SEQ ID NO: 111) and GV-35 (SEQ ID NO: 155). The corresponding predicted amino acid sequences are provided in SEQ ID NO: 112 and 156, respectively. An extended DNA sequence for GVs-9 is provided in SEQ ID NO: 153, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 154. The predicted amino acid sequence for GVs-9 has been amended in SEQ ID NO: 197.

[0175] All of these amino acid sequences were compared to known amino acid sequences in the SwissProt data base (version R32) using the GeneAssist system. No significant homologies were obtained, with the exceptions of GVs-3, GVs-4, GVs-5 and GVs-9. GVs-9 was found to bear some homology to two previously identified M. tuberculosis proteins, namely M. tuberculosis cutinase precursor and a M. tuberculosis hypothetical 22.6 kDa protein. GVs-3, GVs-4 and GVs-5 were found to bear some similarity to the antigen 85A and 85B proteins from M. leprae (SEQ ID NO: 30 and 31, respectively), M. tuberculosis (SEQ ID NO: 32 and 33, respectively) and M. bovis (SEQ ID NO: 34 and 35, respectively), and the antigen 85C proteins from M. leprae (SEQ ID NO: 36) and M. tuberculosis (SEQ ID NO: 37).

EXAMPLE 7 DNA Cloning Strategy for the M. Vaccae Antigen 85 Series

[0176] Probes for antigens 85A, 85B, and 85C were prepared by the polymerase chain reaction (PCR) using degenerate oligonucleotides (SEQ ID NO: 38 and 39) designed to regions of antigen 85 genomic sequence that are conserved between family members in a given mycobacterial species, and between mycobacterial species. These oligonucleotides were used under reduced stringency conditions to amplify target sequences from M. vaccae genomic DNA. An appropriately-sized 485 bp band was identified, purified, and cloned pBluescript II SK⁺ 0 (Stratagene, La Jolla, Calif.). Twenty-four individual colonies were screened at random for the presence of the antigen 85 PCR product, then sequenced using the Perkin Elmer/Applied Biosystems Model 377 automated sequencer and the M13-based primers, T3 and T7. Homology searches of the GenBank databases showed that twenty-three clones contained insert with significant homology to published antigen 85 genes from M. tuberculosis and M. bovis. Approximately half were most homologous to antigen 85C gene sequences, with the remainder being more similar to antigen 85B sequences. In addition, these two putative M. vaccae antigen 85 genomic sequences were 80% homologous to one another. Because of this high similarity, the antigen 85C PCR fragment was chosen to screen M. vaccae genomic libraries at low stringency for all three antigen 85 genes.

[0177] An M. vaccae genomic library was created in lambda Zap-Express (Stratagene, La Jolla, Calif.) by cloning BamHI partially-digested M. vaccae genomic DNA into similarly-digested vector, with 3.4×10⁵ independent plaque-forming units resulting. For screening purposes, twenty-seven thousand plaques from this non-amplified library were plated at low density onto eight 100 cm² plates. For each plate, duplicate plaque lifts were taken onto Hybond-N⁺ nylon membrane (Amersham International, United Kingdom), and hybridised under reduced-stringency conditions (55° C.) to the radiolabelled antigen 85C PCR product. Autoradiography demonstrated that seventy-nine plaques consistently hybridised to the antigen 85C probe under these conditions. Thirteen positively-hybridising plaques were selected at random for further analysis and removed from the library plates, with each positive clone being used to generate secondary screening plates containing about two hundred plaques. Duplicate lifts of each plate were taken using Hybond-N⁺ nylon membrane, and hybridised under the conditions used in primary screening. Multiple positively-hybridising plaques were identified on each of the thirteen plates screened. Two well-isolated positive phage from each secondary plate were picked for further analysis. Using in vitro excision, twenty-six plaques were converted into phagemid, and restriction-mapped. It was possible to group clones into four classes on the basis of this mapping. Sequence data from the 5′ and 3′ ends of inserts from several representatives of each group was obtained using the Perkin Elmer/Applied Biosystems Division Model 377 automated sequencer and the T3 and T7 primers. Sequence homologies were determined using FASTA analysis of the GenBank databases with the GeneAssist software package. Two of these sets of clones were found to be homologous to M. bovis and M. tuberculosis antigen 85A genes, each containing either the 5′ or 3′ ends of the M. vaccae gene (this gene was cleaved during library construction as it contains an internal BamHI site). The remaining clones were found to contain sequences homologous to antigens 85B and 85C from a number of mycobacterial species. To determine the remaining nucleotide sequence for each gene, appropriate subclones were constructed and sequenced. Overlapping sequences were aligned using the DNA Strider software. The determined DNA sequences for M. vaccae antigens 85A, 85B and 85C are shown in SEQ ID NO: 40-42, respectively, with the predicted amino acid sequences being shown in SEQ ID NO: 43-45, respectively.

[0178] The M. vaccae antigens GVs-3 and GVs-5 were expressed and purified as follows. Amplification primers were designed from the insert sequences of GVs-3 and GVs-5 (SEQ ID NO: 40 and 42, respectively) using sequence data downstream from the putative leader sequence and the 3′ end of the clone. The sequences of the primers for GVs-3 are provided in SEQ ID NO: 66 and 67, and the sequences of the primers for GVs-5 are provided in SEQ ID NO: 68 and 69. A XhoI restriction site was added to the primers for GVs-3, and EcoRI and BamHI restriction sites were added to the primers for GVs-5 for cloning convenience. Following amplification from genomic M. vaccae DNA, fragments were cloned into the appropriate site of pProEX HT prokaryotic expression vector (Gibco BRL, Life Technologies, Gaithersburg, Md.) and submitted for sequencing to confirm the correct reading frame and orientation. Expression and purification of the recombinant protein was performed according to the manufacturer's protocol.

[0179] Expression of a fragment of the M. vaccae antigen GVs-4 (antigen 85B homolog) was performed as follows. The primers AD58 and AD59, described above, were used to amplify a 485 bp fragment from M. vaccae genomic DNA. This fragment was gel-purified using standard techniques and cloned into EcoRV-digested pBluescript. The base sequences of inserts from five clones were determined and found to be identical to each other. These inserts had highest homology to Ag85B from M. tuberculosis. The insert from one of the clones was subcloned into the EcoRI/XhoI sites of pProEX HT prokaryotic expression vector (Gibco BRL), expressed and purified according to the manufacturer's protocol. This clone was renamed GV-4P because only a part of the gene was expressed. The amino acid and DNA sequences for the partial clone GV-4P are provided in SEQ ID NO: 70 and 106, respectively.

[0180] Similar to the cloning of GV-4P, the amplification primers AD58 and AD59 were used to amplify a 485 bp fragment from a clone containing GVs-5 (SEQ ID NO:42). This fragment was cloned into the expression vector pET16 and was called GV-5P. The determined nucleotide sequence and predicted amino acid sequence of GV-5P are provided in SEQ ID NO: 157 and 158, respectively.

[0181] The ability of purified recombinant GVs-3, GV-4P and GVs-5 to stimulate proliferation of T cells and interferon-γ production in human PBL was assayed as described above. The results of this assay are shown in Table 9, wherein (−) indicates a lack of activity, (±) indicates polypeptides having a result less than twice higher than background activity of control media, (+) indicates polypeptides having activity two to four times above background, (++) indicates polypeptides having activity greater than four times above background, and ND indicates not determined. TABLE 9 Donor Donor Donor Donor Donor Donor G97005 G97006 G97007 G97008 G97009 G97010 Prolif IFN-g Prolif IFN-g Prolif IFN-g Prolif IFN-g Prolif IFN-g Prolif IFN-g GVs-3 ++ + ND ND ++ ++ ++ ++ ++ +/− + ++ GV-4P + +/− ND ND + ++ ++ ++ +/− +/− +/− ++ GVs-5 ++ ++ ++ ++ ++ ++ + ++ ++ + + ++

EXAMPLE 8 DNA Cloning Strategy for M. vaccae Antigens

[0182] An 84 bp probe for the M. vaccae antigen GVc-7 was amplified using degenerate oligonucleotides designed to the determined amino acid sequence of GVc-7 (SEQ ID NO: 5-8). This probe was used to screen a M. vaccae genomic DNA library as described in Example 4. The determined nucleotide sequence for GVc-7 is shown in SEQ ID NO: 46 and predicted amino acid sequence in SEQ ID NO: 47. Comparison of these sequences with those in the databank revealed homology to a hypothetical 15.8 kDa membrane protein of M. tuberculosis.

[0183] The sequence of SEQ ID NO: 46 was used to design amplification primers (provided in SEQ ID NO: 71 and 72) for expression cloning of the GVc-7 gene using sequence data downstream from the putative leader sequence. A XhoI restriction site was added to the primers for cloning convenience. Following amplification from genomic M. vaccae DNA, fragments were cloned into the XhoI-site of pProEX HT prokaryotic expression vector (Gibco BRL) and submitted for sequencing to confirm the correct reading frame and orientation. Expression and purification of the fusion protein was performed according to the manufacturer's protocol.

[0184] The ability of purified recombinant GVc-7 to stimulate proliferation of T-cells and stimulation of interferon-γ production in human PBL was assayed as described above. The results are shown in Table 10, wherein (−) indicates a lack of activity, (±) indicates polypeptides having a result less than twice higher than background activity of control media, (+) indicates polypeptides having activity two to four times above background, and (++) indicates polypeptides having activity greater than four times above background. TABLE 10 Donor Proliferation Interferon-γ G97005 ++ +/− G97008 ++ + G97009 + +/− G97010 +/− ++

[0185] A redundant oligonucleotide probe (SEQ ID NO: 73, referred to as MPG15) was designed to the GVs-8 peptide sequence shown in SEQ ID NO: 26 and used to screen a M. vaccae genomic DNA library using standard protocols. A genomic clone containing genes encoding four different antigens was isolated. The determined DNA sequences for GVs-8A (re-named GV-30), GVs-8B (re-named GV-31), GVs-8C (re-named GV-32) and GVs-8D, (re-named GV-33) are shown in SEQ ID NO: 48-51, respectively, with the corresponding amino acid sequences being shown in SEQ ID NO: 52-55, respectively. GV-30 contains regions showing some similarity to known prokaryotic valyl-tRNA synthetases; GV-31 shows some similarity to M. smegmatis aspartate semialdehyde dehydrogenase; and GV-32 shows some similarity to the H. influenza folylpolyglutamate synthase gene. GV-33 contains an open reading frame which shows some similarity to sequences previously identified in M. tuberculosis and M. leprae, but whose function has not been identified.

[0186] The determined partial DNA sequence for GV-33 is provided in SEQ ID NO:74 with the corresponding predicted amino acid sequence being provided in SEQ ID NO:75. Sequence data from the 3′ end of the clone showed homology to a previously identified 40.6 kDa outer membrane protein of M. tuberculosis. Subsequent studies led to the isolation of the full-length DNA sequence for GV-33 (SEQ ID NO: 193). The corresponding predicted amino acid sequence is provided in SEQ ID NO: 194.

[0187] The gene encoding GV-33 was amplified from M. vaccae genomic DNA with primers based on the determined nucleotide sequence. This DNA fragment was cloned into EcoRv-digested pBluescript II SK⁺ (Stratagene), and then transferred to pET16 expression vector. Recombinant protein was purified following the manufacturer's protocol.

[0188] The ability of purified recombinant GV-33 to stimulate proliferation of T-cells and stimulation of interferon-γ production in human PBL was assayed as described above. The results are shown in Table 11, wherein (−) indicates a lack of activity, (±) indicates polypeptides having a result less than twice higher than background activity of control media, (+) indicates polypeptides having activity two to four times above background, and (++) indicates polypeptides having activity greater than four times above background. TABLE 11 Stimulatory Activity of Polypeptides Donor Proliferation Interferon-γ G97005 ++ + G97006 ++ ++ G97007 − +/− G97008 +/− − G97009 +/− − G97010 +/− ++

EXAMPLE 9 DNA Cloning Strategy for the M. Vaccae Antigens GV-23, GV-24, GV-25, GV-26, GV-38A and GV-38B

[0189]M. vaccae (ATCC Number 15483) was grown in sterile Medium 90 at 37° C. for 4 days and harvested by centrifugation. Cells were resuspended in 1 ml Trizol (Gibco BRL, Life Technologies, Gaithersburg, Md.) and RNA extracted according to the standard manufacturer's protocol. M. tuberculosis strain H37Rv (ATCC Number 27294) was grown in sterile Middlebrooke 7H9 medium with Tween 80™ and oleic acid/ albumin/dextrose/catalase additive (Difco Laboratories, Detroit, Mich.) at 37° C. and harvested under appropriate laboratory safety conditions. Cells were resuspended in 1 ml Trizol (Gibco BRL) and RNA extracted according to the manufacturer's standard protocol.

[0190] Total M. tuberculosis and M. vaccae RNA was depleted of 16S and 23S ribosomal RNA (rRNA) by hybridization of the total RNA fraction to oligonucleotides AD10 and AD11 (SEQ ID NO: 81 and 82) complementary to M. tuberculosis rRNA. These oligonucleotides were designed from mycobacterial 16S rRNA sequences published by Bottger (FEMS Microbiol. Lett. 65:171-176, 1989) and from sequences deposited in the databanks. Depletion was done by hybridisation of total RNA to oligonucleotides AD10 and AD11 immobilised on nylon membranes (Hybond N, Amersham International, United Kingdom). Hybridization was repeated until rRNA bands were not visible on ethidium bromide-stained agarose gels. An oligonucleotide, AD12 (SEQ ID NO: 83), consisting of 20 dATP-residues, was ligated to the 3′ ends of the enriched mRNA fraction using RNA ligase. First strand cDNA synthesis was performed following standard protocols, using oligonucleotide AD7 (SEQ ID NO:84) containing a poly(dT) sequence.

[0191] The M. tuberculosis and M. vaccae cDNA was used as template for single-sided-specific PCR (3S-PCR). For this protocol, a degenerate oligonucleotide AD1 (SEQ ID NO:85) was designed based on conserved leader sequences and membrane protein sequences. After 30 cycles of amplification using primer AD1 as 5′-primer and AD7 as 3′-primer, products were separated on a urea/polyacrylamide gel. DNA bands unique to M. vaccae were excised and re-amplified using primers AD1 and AD7. After gel purification, bands were cloned into pGEM-T (Promega) and the base sequence determined.

[0192] Searches with the determined nucleotide and predicted amino acid sequences of band 12B21 (SEQ ID NO: 86 and 87, respectively) showed homology to the pota gene of E.coli encoding the ATP-binding protein of the spermidine/putrescine ABC transporter complex published by Furuchi et al. (Jnl. Biol. Chem. 266: 20928-20933, 1991). The spermidine/putrescine transporter complex of E.coli consists of four genes and is a member of the ABC transporter family. The ABC (ATP-binding Cassette) transporters typically consist of four genes: an ATP-binding gene, a periplasmic, or substrate binding, gene and two transmembrane genes. The transmembrane genes encode proteins each characteristically having six membrane-spanning regions. Homologues (by similarity) of this ABC transporter have been identified in the genomes of Haemophilus influenza (Fleischmann et al. Science 269:496-512, 1995) and Mycoplasma genitalium (Fraser, et al. Science, 270:397-403, 1995).

[0193] A M. vaccae genomic DNA library constructed in BamHI-digested lambda ZAP Express (Stratagene) was probed with the radiolabelled 238 bp band 12B21 following standard protocols. A plaque was purified to purity by repetitive screening and a phagemid containing a 4.5 kb insert was identified by Southern blotting and hybridisation. The nucleotide sequence of the full-length M. vaccae homologue of pota (ATP-binding protein) was identified by subcloning of the 4.5 kb fragment and base sequencing. The gene consisted of 1449 bp including an untranslated 5′ region of 320 bp containing putative −10 and −35 promoter elements. The nucleotide and predicted amino acid sequences of the M. vaccae pota homologue are provided in SEQ ID NO: 88 and 89, respectively.

[0194] The nucleotide sequence of the M. vaccae pota gene was used to design primers EV24 and EV25 (SEQ ID NO: 90 and 91) for expression cloning. The amplified DNA fragment was cloned into pProEX HT prokaryotic expression system (Gibco BRL) and expression in an appropriate E.coli host was induced by addition of 0.6 mM isopropylthio-β-galactoside (IPTG). The recombinant protein was named GV-23 and purified from inclusion bodies according to the manufacturer's protocol.

[0195] A 322 bp Sal1-BamH1 subclone at the 3′-end of the 4.5 kb insert described above showed homology to the potd gene, (periplasmic protein), of the spermidine/putrescine ABC transporter complex of E. coli. The nucleotide sequence of this subclone is shown in SEQ ID NO:92. To identify the gene, the radiolabelled insert of this subclone was used to probe an M. vaccae genomic DNA library constructed in the Sal1-site of lambda Zap-Express (Stratagene) following standard protocols. A clone was identified of which 1342 bp showed homology with the potd gene of E. coli. The potd homologue of M. vaccae was identified by sub-cloning and base sequencing. The determined nucleotide and predicted amino acid sequences are shown in SEQ ID NO: 93 and 94.

[0196] For expression cloning, primers EV26 and EV27 (SEQ ID NO:95-96) were designed from the determined M. vaccae potd homologue. The amplified fragment was cloned into pProEX HT Prokaryotic expression system (Gibco BRL). Expression in an appropriate E. coli host was induced by addition of 0.6 mM IPTG and the recombinant protein named GV-24. The recombinant antigen was purified from inclusion bodies according to the protocol of the supplier.

[0197] To improve the solubility of the purified recombinant antigen, the gene encoding GV-24, but excluding the signal peptide, was re-cloned into the expression vector, employing. amplification primers EV101 and EV102 (SEQ ID NO: 167 and 168). The construct was designated GV-24B. The nucleotide sequence of GV-24B is provided in SEQ ID NO: 169 and the predicted amino acid sequence in SEQ ID NO: 170. This fragment was cloned into pET16 for expression and purification of GV-24B according to the manufacturer's protocols.

[0198] The ability of purified recombinant protein GV-23 and GV-24 to stimulate proliferation of T cells and interferon-production in human PBL was determined as described above. The results of these assays are provided in Table 12, wherein (−) indicates a lack of activity, (±) indicates polypeptides having a result less than twice higher than background activity of control media, indicates polypeptides having activity two to four times above background, (++) indicates polypeptides having activity greater than four times above background, and (ND) indicates not determined. TABLE 12 Donor Donor Donor Donor Donor Donor G97005 G97006 G97007 G97008 G97009 G97010 Prolif IFN-g Prolif IFN-g Prolif IFN-γ-g Prolif IFN-g Prolif IFN-g Prolif IFN-g GV-23 ++ ++ ++ ++ + + ++ ++ + − + ++ GV-24 ++ + ++ + ND ND + +/− + +/− +/− ++

[0199] Base sequence adjacent to the M. vaccae potd gene-homologue was found to show homology to the potb gene of the spermidine/putrescine ABC transporter complex of E.coli, which is one of two transmembrane proteins in the ABC transporter complex. The M. vaccae potb homologue (referred to as GV-25) was identified through further subcloning and base sequencing. The determined nucleotide and predicted amino acid sequences for GV-25 are shown in SEQ ID NO: 97 and 98, respectively.

[0200] Further subcloning and base sequence analysis of the adjacent 509 bp failed to reveal significant homology to PotC, the second transmembrane protein of E.coli, and suggests that a second transmembrane protein is absent in the M. vaccae homologue of the ABC transporter. An open reading frame with homology to M. tuberculosis acetyl-CoA acetyl transferase, however, was identified starting 530 bp downstream of the transmembrane protein and the translated protein was named GV-26. The determined partial nucleotide sequence and predicted amino acid sequence for GV-26 are shown in SEQ ID NO: 99 and 100.

[0201] Using a protocol similar to that described above for the isolation of GV-23, the 3S-PCR band 12B28 (SEQ ID NO: 119) was used to screen the M. vaccae genomic library constructed in the BamHI-site of lambda ZAP-Express (Stratagene). The clone isolated from the library contained a novel open reading frame and the antigen encoded by this gene was named GV-38A. The determined nucleotide sequence and predicted amino acid sequence of GV-38A are shown in SEQ ID NO: 120 and 121, respectively. Subsequent studies led to the isolation of an extended DNA sequence for GV-38A, provided in SEQ ID NO: 171. The corresponding amino acid sequence is provided in SEQ ID NO: 172. Comparison of these sequences with those in the databases revealed only a limited amount of homology to an unknown M. tuberculosis protein previously identified in cosmid MTCY428.12.

[0202] Upstream of the GV-38A gene, a second novel open reading frame was identified and the antigen encoded by this gene was named GV-38B. The determined 5′ and 3′ nucleotide sequences for GV-38B are provided in SEQ ID NO: 122 and 123, respectively, with the corresponding predicted amino acid sequences being provided in SEQ ID NO: 124 and 125, respectively. Further studies led to the isolation of the full-length DNA sequence for GV-38B, provided in SEQ ID NO: 173. The corresponding amino acid sequence is provided in SEQ ID NO: 174. This protein was found to show only a limited amount of homology to an unknown M. tuberculosis protein identified as a putative open reading frame in cosmid MTCY428.11 (SPTREMBL: P71914).

[0203] Both the GV-38A and GV-38B antigens were amplified for expression cloning into pET16 (Novagen). GV-38A was amplified with primers KR11 and KR12 (SEQ ID NO: 126 and 127) and GV-38B with primers KR13 and KR14 (SEQ ID NO: 128 and 129). Protein expression in the host cells BL21(DE3) was induced with 1 mM IPTG, however no protein expression was obtained from these constructs. Hydrophobic regions were identified in the N-termini of antigens GV-38A and GV-38B which may inhibit expression of these constructs. The hydrophobic region present in GV-38A was identified as a possible transmembrane motif with six membrane spanning regions. To express the antigens without the hydrophobic regions, primers KR20 for GV-38A, (SEQ ID NO: 130) and KR21 for GV-38B (SEQ ID NO: 131) were designed. The truncated GV-38A gene was amplified with primers KR20 and KR12, and the truncated GV-38B gene with KR21 and KR14. The determined nucleotide sequences of truncated GV-38A and GV-38B are shown in SEQ ID NO: 132 and 133, respectively, with the corresponding predicted amino acid sequences being shown in SEQ ID NO: 134 and 135, respectively. Extended DNA sequences for truncated GV-38A and GV-38B are provided in SEQ ID NO: 175 and 176, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO: 177 and 178, respectively.

EXAMPLE 10 Purification and Characterisation of Polypeptides from M. vaccae Culture Filtrate by Preparative Isoelectric Focusing and Preparative Polyacrylamide Gel Electrophoresis

[0204]M. vaccae soluble proteins were isolated from culture filtrate using preparative isoelectric focusing and preparative polyacrylamide gel electrophoresis as described below. Unless otherwise noted, all percentages in the following example are weight per volume.

[0205]M. vaccae (ATCC Number 15483) was cultured in 250 l sterile Medium 90 which had been fractionated by ultrafiltration to remove all proteins of greater than 10 kDa molecular weight. The medium was centrifuged to remove the bacteria, and sterilised by filtration through a 0.45μ filter. The sterile filtrate was concentrated by ultrafiltration over a 10 kDa molecular weight cut-off membrane.

[0206] Proteins were isolated from the concentrated culture filtrate by precipitation with 10% trichloroacetic acid. The precipitated proteins were re-dissolved in 100 mM Tris.HCl pH 8.0 and re-precipitated by the addition of an equal volume of acetone. The acetone precipitate was dissolved in water, and proteins were re-precipitated by the addition of an equal volume of chloroform:methanol 2:1 (v/v). The chloroform:methanol precipitate was dissolved in water, and the solution was freeze-dried.

[0207] The freeze-dried protein was dissolved in iso-electric focusing buffer, containing 8 M deionised urea, 2% Triton X-100, 10 mM dithiothreitol and 2% ampholytes (pH 2.5-5.0). The sample was fractionated by preparative iso-electric focusing on a horizontal bed of Ultrodex gel at 8 watts constant power for 16 hours. Proteins were eluted from the gel bed fractions with water and concentrated by precipitation with 10% trichloroacetic acid.

[0208] Pools of fractions containing proteins of interest were identified by analytical polyacrylamide gel electrophoresis and fractionated by preparative polyacrylamide gel electrophoresis. Samples were fractionated on 12.5% SDS-PAGE gels, and electroblotted onto nitrocellulose membranes. Proteins were located on the membranes by staining with Ponceau Red, destained with water and eluted from the membranes with 40% acetonitrile/0.1M ammonium bicarbonate pH 8.9 and then concentrated by lyophilization.

[0209] Eluted proteins were assayed for their ability to induce proliferation and interferon-γ secretion from the peripheral blood lymphocytes of immune donors as detailed in Example 4. Proteins inducing a strong response in these assays were selected for further study.

[0210] Selected proteins were further purified by reversed-phase chromatography on a Vydac Protein C4 column, using a trifluoroacetic acid-acetonitrile system. Purified proteins were prepared for protein sequence determination by SDS-polyacrylamide gel electrophoresis, and electroblotted onto PVDF membranes. Protein sequences were determined as in Example 5. The proteins were named GV-40, GV-41, GV-42, GV-43 and GV-44. The determined N-terminal sequences for these polypeptides are shown in SEQ ID NO:101-105, respectively. Subsequent studies led to the isolation of a 5′, middle fragment and 3′ DNA sequence for GV-42 (SEQ ID NO: 136, 137 and 138, respectively). The corresponding predicted amino acid sequences are provided in SEQ ID NO: 139, 140 and 141, respectively.

[0211] Following standard DNA amplification and cloning procedures as described in Example 7, the genes encoding GV-41 and GV-42 were cloned. The determined nucleotide sequences are provided in SEQ ID NO: 179 and 180, respectively, and the predicted amino acid sequences in SEQ ID NO: 181 and 182. Further experiments lead to the cloning of the full-length gene encoding GV-41, which was named GV-41B. The determined nucleotide sequence and the predicted amino acid sequence of GV-41B are provided in SEQ ID NO: 202 and 203, respectively. GV-41 had homology to the ribosome recycling factor of M. tuberculosis and M. leprae, and GV-42 had homology to a M. avium fibronectin attachment protein FAP-A. Within the full-length sequence of GV-42, the amino acid sequence determined for GV-43 (SEQ ID NO: 104) was identified, indicating that the amino acid sequences for GV-42 and GV-43 were obtained from the same protein.

[0212] Murine polyclonal antisera were prepared against GV-40 and GV-44 following standard procedures. These antisera were used to screen a M. vaccae genomic DNA library consisting of randomly sheared DNA fragments. Clones encoding GV-40 and GV-44 were identified and sequenced. The determined nucleotide sequence of the partial gene encoding GV-40 is provided in SEQ ID NO: 183 and the predicted amino acid sequence in SEQ ID NO: 184. The complete gene encoding GV-40 was not cloned, and the antigen encoded by this partial gene was named GV-40P. An extended DNA sequence for GV-40P is provided in SEQ ID NO: 206 with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 207. The nucleotide sequence of the gene encoding GV-44 is provided in SEQ ID NO: 185, and the predicted amino acid sequence in SEQ ID NO:186. With further sequencing, the determined DNA sequence for the full-length gene encoding GV-44 was obtained and is provided in SEQ ID NO: 204, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 205. Homology of GV-40 to M. leprae Elongation factor G was found. GV-44 had homology to M. leprae glyceraldehyde-3-phosphate dehydrogenase.

EXAMPLE 11 DNA Cloning Strategy for the DD-M. vaccae Antigen GV-45

[0213] Proteins were extracted from DD-M. vaccae (500 mg; prepared as described above) by suspension in 10 ml 2% SDS/PBS and heating to 50° C. for 2 h. The insoluble residue was removed by centrifugation, and proteins precipitated from the supernatant by adding an equal volume of acetone and incubating at −20° C. for 1 hr. The precipitated proteins were collected by centrifugation, dissolved in reducing sample buffer, and fractionated by preparative SDS-polyacrylamide gel electrophoresis. The separated proteins were electroblotted onto PVDF membrane in 10 mM CAPS/0.01% SDS pH 11.0, and N-terminal sequences were determined in a gas-phase sequenator.

[0214] The amino acid sequence obtained from these experiments was designated GV-45. The determined N-terminal sequence for GV-45 is provided in SEQ ID NO: 187. From the same experiments, a protein of approximate molecular weight of 14 kDa, designated GV-46, was obtained. The determined N-terminal amino acid sequence of GV-46 is provided in SEQ ID NO: 208. GV 46 is homologous to the highly conserved mycobacterial host integration factor of M. tuberculosis and M. smegmatis.

[0215] From the amino acid sequence of GV-45, degenerate oligonucleotides KR32 and KR33 (SEQ ID NO: 188 and 189, respectively) were designed. A 100 bp fragment was amplified, cloned into plasmid pBluescript II SK⁺ (Stratagene, La Jolla, Calif.) and sequenced (SEQ ID NO:190) following standard procedures (Maniatis). The cloned insert was used to screen a M. vaccae genomic DNA library constructed in the BamHI-site of lambda ZAP-Express (Stratagene). The isolated clone showed homology to a 35 kDa M. tuberculosis and a 22 kDa M. leprae protein containing bacterial histone-like motifs at the N-terminus and a unique C-terminus consisting of a five amino acid basic repeat. The determined nucleotide sequence for GV-45 is provided in SEQ ID NO: 191, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 192. With additional sequencing, the determined DNA sequence for the full-length gene encoding GV-45 was obtained and is provided in SEQ ID NO: 200, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 201.

[0216] Although the present invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, changes and modifications can be carried out without departing from the scope of the invention which is intended to be limited only by the scope of the claims.

0 SEQUENCE LISTING <160> NUMBER OF SEQ ID NOS: 208 <210> SEQ ID NO 1 <211> LENGTH: 25 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <400> SEQUENCE: 1 Ala Pro Val Gly Pro Gly Xaa Ala Ala Tyr Val Gln Gln Val Pro Asp 1 5 10 15 Gly Pro Gly Ser Val Gln Gly Met Ala 20 25 <210> SEQ ID NO 2 <211> LENGTH: 10 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <400> SEQUENCE: 2 Met Xaa Asp Gln Leu Lys Val Asn Asp Asp 1 5 10 <210> SEQ ID NO 3 <211> LENGTH: 11 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <400> SEQUENCE: 3 Met Xaa Pro Val Pro Val Ala Thr Ala Ala Tyr 1 5 10 <210> SEQ ID NO 4 <211> LENGTH: 21 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 4 Thr Pro Ala Pro Ala Pro Pro Pro Tyr Val Asp His Val Glu Gln Ala 1 5 10 15 Lys Phe Gly Asp Leu 20 <210> SEQ ID NO 5 <211> LENGTH: 29 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (25)...(25) <400> SEQUENCE: 5 Met Gln Ala Phe Asn Ala Asp Ala Tyr Ala Phe Ala Lys Arg Glu Lys 1 5 10 15 Val Ser Leu Ala Pro Gly Val Pro Xaa Val Phe Glu Thr 20 25 <210> SEQ ID NO 6 <211> LENGTH: 21 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (6)...(6) <400> SEQUENCE: 6 Met Ala Asp Pro Asn Xaa Ala Ile Leu Gln Val Ser Lys Thr Thr Arg 1 5 10 15 Gly Gly Gln Ala Ala 20 <210> SEQ ID NO 7 <211> LENGTH: 11 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 7 Met Pro Ile Leu Gln Val Ser Gln Thr Gly Arg 1 5 10 <210> SEQ ID NO 8 <211> LENGTH: 14 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <221> NAME/KEY: UNSURE <222> LOCATION: (6)...(6) <400> SEQUENCE: 8 Met Xaa Asp Pro Ile Xaa Leu Gln Leu Gln Val Ser Ser Thr 1 5 10 <210> SEQ ID NO 9 <211> LENGTH: 16 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 9 Lys Ala Thr Tyr Val Gln Gly Gly Leu Gly Arg Ile Glu Ala Arg Val 1 5 10 15 <210> SEQ ID NO 10 <211> LENGTH: 9 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <400> SEQUENCE: 10 Lys Xaa Gly Leu Ala Asp Leu Ala Pro 1 5 <210> SEQ ID NO 11 <211> LENGTH: 14 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (12)...(12) <223> OTHER INFORMATION: Residue can be either Glu or Ile <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <400> SEQUENCE: 11 Lys Xaa Tyr Ala Leu Ala Leu Met Ser Ala Val Xaa Ala Ala 1 5 10 <210> SEQ ID NO 12 <211> LENGTH: 11 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (10)...(10) <400> SEQUENCE: 12 Lys Asn Pro Gln Val Ser Asp Glu Leu Xaa Thr 1 5 10 <210> SEQ ID NO 13 <211> LENGTH: 21 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (9)...(9) <400> SEQUENCE: 13 Ala Pro Ala Pro Ala Ala Pro Ala Xaa Gly Asp Pro Ala Ala Val Val 1 5 10 15 Ala Ala Met Ser Thr 20 <210> SEQ ID NO 14 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (5)...(5) <400> SEQUENCE: 14 Glu Ala Glu Val Xaa Tyr Leu Gly Gln Pro Gly Glu Leu Val Asn 1 5 10 15 <210> SEQ ID NO 15 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <223> OTHER INFORMATION: Residue can be either Gly or Ala <221> NAME/KEY: UNSURE <222> LOCATION: (15)...(15) <223> OTHER INFORMATION: Residue can be either Pro or Ala <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <400> SEQUENCE: 15 Ala Xaa Val Val Pro Pro Xaa Gly Pro Pro Ala Pro Gly Ala Xaa 1 5 10 15 <210> SEQ ID NO 16 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 16 Ala Pro Ala Pro Asp Leu Gln Gly Pro Leu Val Ser Thr Leu Ser 1 5 10 15 <210> SEQ ID NO 17 <211> LENGTH: 25 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 17 Ala Thr Pro Asp Trp Ser Gly Arg Tyr Thr Val Val Thr Phe Ala Ser 1 5 10 15 Asp Lys Leu Gly Thr Ser Val Ala Ala 20 25 <210> SEQ ID NO 18 <211> LENGTH: 25 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (15)...(15) <223> OTHER INFORMATION: Residue can be either Ala or Arg <221> NAME/KEY: UNSURE <222> LOCATION: (23)...(23) <223> OTHER INFORMATION: Residue can be either Val or Leu <221> NAME/KEY: UNSURE <222> LOCATION: (16)...(16) <400> SEQUENCE: 18 Ala Pro Pro Tyr Asp Asp Arg Gly Tyr Val Asp Ser Thr Ala Xaa Xaa 1 5 10 15 Ala Ser Pro Pro Thr Leu Xaa Val Val 20 25 <210> SEQ ID NO 19 <211> LENGTH: 8 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 19 Glu Pro Glu Gly Val Ala Pro Pro 1 5 <210> SEQ ID NO 20 <211> LENGTH: 25 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (21)...(22) <400> SEQUENCE: 20 Glu Pro Ala Gly Ile Pro Ala Gly Phe Pro Asp Val Ser Ala Tyr Ala 1 5 10 15 Ala Val Asp Pro Xaa Xaa Tyr Val Val 20 25 <210> SEQ ID NO 21 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <400> SEQUENCE: 21 Ala Pro Val Gly Pro Gly Xaa Ala Ala Tyr Val Gln Gln Val Pro 1 5 10 15 <210> SEQ ID NO 22 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 22 Phe Ser Arg Pro Gly Leu Pro Val Glu Tyr Leu Met Val Pro Ser 1 5 10 15 <210> SEQ ID NO 23 <211> LENGTH: 19 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 23 Phe Ser Arg Pro Gly Leu Pro Val Glu Tyr Leu Met Val Pro Ser Pro 1 5 10 15 Ser Met Gly <210> SEQ ID NO 24 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 24 Phe Ser Arg Pro Gly Leu Pro Val Glu Tyr Leu Asp Val Phe Ser 1 5 10 15 <210> SEQ ID NO 25 <211> LENGTH: 14 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(2) <400> SEQUENCE: 25 Xaa Xaa Thr Gly Leu His Arg Leu Arg Met Met Val Pro Asn 1 5 10 <210> SEQ ID NO 26 <211> LENGTH: 20 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (16)...(16) <223> OTHER INFORMATION: Residue can be either Ser or Val <221> NAME/KEY: UNSURE <222> LOCATION: (17)...(17) <223> OTHER INFORMATION: Residue can be either Gln or Val <400> SEQUENCE: 26 Val Pro Ala Asp Pro Val Gly Ala Ala Ala Gln Ala Glu Pro Ala Xaa 1 5 10 15 Xaa Arg Ile Asp 20 <210> SEQ ID NO 27 <211> LENGTH: 14 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (4)...(4) <223> OTHER INFORMATION: Residue can be either Tyr or Pro <221> NAME/KEY: UNSURE <222> LOCATION: (8)...(8) <223> OTHER INFORMATION: Residue can be either Val or Gly <221> NAME/KEY: UNSURE <222> LOCATION: (9)...(9) <223> OTHER INFORMATION: Residue can be either Ile or Tyr <221> NAME/KEY: UNSURE <222> LOCATION: (3)...(3) <400> SEQUENCE: 27 Asp Pro Xaa Xaa Asp Ile Glu Xaa Xaa Phe Ala Arg Gly Thr 1 5 10 <210> SEQ ID NO 28 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 28 Ala Pro Ser Leu Ser Val Ser Asp Tyr Ala Arg Asp Ala Gly Phe 1 5 10 15 <210> SEQ ID NO 29 <211> LENGTH: 16 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <223> OTHER INFORMATION: Residue can be either Leu or Pro <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <221> NAME/KEY: UNSURE <222> LOCATION: (5)...(5) <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <221> NAME/KEY: UNSURE <222> LOCATION: (10)...(10) <400> SEQUENCE: 29 Xaa Xaa Leu Ala Xaa Ala Xaa Leu Gly Xaa Thr Val Asp Ala Asp Gln 1 5 10 15 <210> SEQ ID NO 30 <211> LENGTH: 330 <212> TYPE: PRT <213> ORGANISM: Mycobacterium leprae <400> SEQUENCE: 30 Met Lys Phe Val Asp Arg Phe Arg Gly Ala Val Ala Gly Met Leu Arg 1 5 10 15 Arg Leu Val Val Glu Ala Met Gly Val Ala Leu Leu Ser Ala Leu Ile 20 25 30 Gly Val Val Gly Ser Ala Pro Ala Glu Ala Phe Ser Arg Pro Gly Leu 35 40 45 Pro Val Glu Tyr Leu Gln Val Pro Ser Pro Ser Met Gly Arg Asp Ile 50 55 60 Lys Val Gln Phe Gln Asn Gly Gly Ala Asn Ser Pro Ala Leu Tyr Leu 65 70 75 80 Leu Asp Gly Leu Arg Ala Gln Asp Asp Phe Ser Gly Trp Asp Ile Asn 85 90 95 Thr Thr Ala Phe Glu Trp Tyr Tyr Gln Ser Gly Ile Ser Val Val Met 100 105 110 Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Ser Pro Ala 115 120 125 Cys Gly Lys Ala Gly Cys Gln Thr Tyr Lys Trp Glu Thr Phe Leu Thr 130 135 140 Ser Glu Leu Pro Glu Tyr Leu Gln Ser Asn Lys Gln Ile Lys Pro Thr 145 150 155 160 Gly Ser Ala Ala Val Gly Leu Ser Met Ala Gly Leu Ser Ala Leu Thr 165 170 175 Leu Ala Ile Tyr His Pro Asp Gln Phe Ile Tyr Val Gly Ser Met Ser 180 185 190 Gly Leu Leu Asp Pro Ser Asn Ala Met Gly Pro Ser Leu Ile Gly Leu 195 200 205 Ala Met Gly Asp Ala Gly Gly Tyr Lys Ala Ala Asp Met Trp Gly Pro 210 215 220 Ser Thr Asp Pro Ala Trp Lys Arg Asn Asp Pro Thr Val Asn Val Gly 225 230 235 240 Thr Leu Ile Ala Asn Asn Thr Arg Ile Trp Met Tyr Cys Gly Asn Gly 245 250 255 Lys Pro Thr Glu Leu Gly Gly Asn Asn Leu Pro Ala Lys Leu Leu Glu 260 265 270 Gly Leu Val Arg Thr Ser Asn Ile Lys Phe Gln Asp Gly Tyr Asn Ala 275 280 285 Gly Gly Gly His Asn Ala Val Phe Asn Phe Pro Asp Ser Gly Thr His 290 295 300 Ser Trp Glu Tyr Trp Gly Glu Gln Leu Asn Asp Met Lys Pro Asp Leu 305 310 315 320 Gln Gln Tyr Leu Gly Ala Thr Pro Gly Ala 325 330 <210> SEQ ID NO 31 <211> LENGTH: 327 <212> TYPE: PRT <213> ORGANISM: Mycobacterium leprae <400> SEQUENCE: 31 Met Ile Asp Val Ser Gly Lys Ile Arg Ala Trp Gly Arg Trp Leu Leu 1 5 10 15 Val Gly Ala Ala Ala Thr Leu Pro Ser Leu Ile Ser Leu Ala Gly Gly 20 25 30 Ala Ala Thr Ala Ser Ala Phe Ser Arg Pro Gly Leu Pro Val Glu Tyr 35 40 45 Leu Gln Val Pro Ser Glu Ala Met Gly Arg Thr Ile Lys Val Gln Phe 50 55 60 Gln Asn Gly Gly Asn Gly Ser Pro Ala Val Tyr Leu Leu Asp Gly Leu 65 70 75 80 Arg Ala Gln Asp Asp Tyr Asn Gly Trp Asp Ile Asn Thr Ser Ala Phe 85 90 95 Glu Trp Tyr Tyr Gln Ser Gly Leu Ser Val Val Met Pro Val Gly Gly 100 105 110 Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Ser Pro Ala Cys Gly Lys Ala 115 120 125 Gly Cys Thr Thr Tyr Lys Trp Glu Thr Phe Leu Thr Ser Glu Leu Pro 130 135 140 Lys Trp Leu Ser Ala Asn Arg Ser Val Lys Ser Thr Gly Ser Ala Val 145 150 155 160 Val Gly Leu Ser Met Ala Gly Ser Ser Ala Leu Ile Leu Ala Ala Tyr 165 170 175 His Pro Asp Gln Phe Ile Tyr Ala Gly Ser Leu Ser Ala Leu Met Asp 180 185 190 Ser Ser Gln Gly Ile Glu Pro Gln Leu Ile Gly Leu Ala Met Gly Asp 195 200 205 Ala Gly Gly Tyr Lys Ala Ala Asp Met Trp Gly Pro Pro Asn Asp Pro 210 215 220 Ala Trp Gln Arg Asn Asp Pro Ile Leu Gln Ala Gly Lys Leu Val Ala 225 230 235 240 Asn Asn Thr His Leu Trp Val Tyr Cys Gly Asn Gly Thr Pro Ser Glu 245 250 255 Leu Gly Gly Thr Asn Val Pro Ala Glu Phe Leu Glu Asn Phe Val His 260 265 270 Gly Ser Asn Leu Lys Phe Gln Asp Ala Tyr Asn Gly Ala Gly Gly His 275 280 285 Asn Ala Val Phe Asn Leu Asn Ala Asp Gly Thr His Ser Trp Glu Tyr 290 295 300 Trp Gly Ala Gln Leu Asn Ala Met Lys Pro Asp Leu Gln Asn Thr Leu 305 310 315 320 Met Ala Val Pro Arg Ser Gly 325 <210> SEQ ID NO 32 <211> LENGTH: 338 <212> TYPE: PRT <213> ORGANISM: Mycobacterium tuberculosis <400> SEQUENCE: 32 Met Gln Leu Val Asp Arg Val Arg Gly Ala Val Thr Gly Met Ser Arg 1 5 10 15 Arg Leu Val Val Gly Ala Val Gly Ala Ala Leu Val Ser Gly Leu Val 20 25 30 Gly Ala Val Gly Gly Thr Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly 35 40 45 Leu Pro Val Glu Tyr Leu Gln Val Pro Ser Pro Ser Met Gly Arg Asp 50 55 60 Ile Lys Val Gln Phe Gln Ser Gly Gly Ala Asn Ser Pro Ala Leu Tyr 65 70 75 80 Leu Leu Asp Gly Leu Arg Ala Gln Asp Asp Phe Ser Gly Trp Asp Ile 85 90 95 Asn Thr Pro Ala Phe Glu Trp Tyr Asp Gln Ser Gly Leu Ser Val Val 100 105 110 Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Gln Pro 115 120 125 Ala Cys Gly Lys Ala Gly Cys Gln Thr Tyr Lys Trp Glu Thr Phe Leu 130 135 140 Thr Ser Glu Leu Pro Gly Trp Leu Gln Ala Asn Arg His Val Lys Pro 145 150 155 160 Thr Gly Ser Ala Val Val Gly Leu Ser Met Ala Ala Ser Ser Ala Leu 165 170 175 Thr Leu Ala Ile Tyr His Pro Gln Gln Phe Val Tyr Ala Gly Ala Met 180 185 190 Ser Gly Leu Leu Asp Pro Ser Gln Ala Met Gly Pro Thr Leu Ile Gly 195 200 205 Leu Ala Met Gly Asp Ala Gly Gly Tyr Lys Ala Ser Asp Met Trp Gly 210 215 220 Pro Lys Glu Asp Pro Ala Trp Gln Arg Asn Asp Pro Leu Leu Asn Val 225 230 235 240 Gly Lys Leu Ile Ala Asn Asn Thr Arg Val Trp Val Tyr Cys Gly Asn 245 250 255 Gly Lys Pro Ser Asp Leu Gly Gly Asn Asn Leu Pro Ala Lys Phe Leu 260 265 270 Glu Gly Phe Val Arg Thr Ser Asn Ile Lys Phe Gln Asp Ala Tyr Asn 275 280 285 Ala Gly Gly Gly His Asn Gly Val Phe Asp Phe Pro Asp Ser Gly Thr 290 295 300 His Ser Trp Glu Tyr Trp Gly Ala Gln Leu Asn Ala Met Lys Pro Asp 305 310 315 320 Leu Gln Arg Ala Leu Gly Ala Thr Pro Asn Thr Gly Pro Ala Pro Gln 325 330 335 Gly Ala <210> SEQ ID NO 33 <211> LENGTH: 325 <212> TYPE: PRT <213> ORGANISM: Mycobacterium tuberculosis <400> SEQUENCE: 33 Met Thr Asp Val Ser Arg Lys Ile Arg Ala Trp Gly Arg Arg Leu Met 1 5 10 15 Ile Gly Thr Ala Ala Ala Val Val Leu Pro Gly Leu Val Gly Leu Ala 20 25 30 Gly Gly Ala Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly Leu Pro Val 35 40 45 Glu Tyr Leu Gln Val Pro Ser Pro Ser Met Gly Arg Asp Ile Lys Val 50 55 60 Gln Phe Gln Ser Gly Gly Asn Asn Ser Pro Ala Val Tyr Leu Leu Asp 65 70 75 80 Gly Leu Arg Ala Gln Asp Asp Tyr Asn Gly Trp Asp Ile Asn Thr Pro 85 90 95 Ala Phe Glu Trp Tyr Tyr Gln Ser Gly Leu Ser Ile Val Met Pro Val 100 105 110 Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Ser Pro Ala Cys Gly 115 120 125 Lys Ala Gly Cys Gln Thr Tyr Lys Trp Glu Thr Phe Leu Thr Ser Glu 130 135 140 Leu Pro Gln Trp Leu Ser Ala Asn Arg Ala Val Lys Pro Thr Gly Ser 145 150 155 160 Ala Ala Ile Gly Leu Ser Met Ala Gly Ser Ser Ala Met Ile Leu Ala 165 170 175 Ala Tyr His Pro Gln Gln Phe Ile Tyr Ala Gly Ser Leu Ser Ala Leu 180 185 190 Leu Asp Pro Ser Gln Gly Met Gly Pro Ser Leu Ile Gly Leu Ala Met 195 200 205 Gly Asp Ala Gly Gly Tyr Lys Ala Ala Asp Met Trp Gly Pro Ser Ser 210 215 220 Asp Pro Ala Trp Glu Arg Asn Asp Pro Thr Gln Gln Ile Pro Lys Leu 225 230 235 240 Val Ala Asn Asn Thr Arg Leu Trp Val Tyr Cys Gly Asn Gly Thr Pro 245 250 255 Asn Glu Leu Gly Gly Ala Asn Ile Pro Ala Glu Phe Leu Glu Asn Phe 260 265 270 Val Arg Ser Ser Asn Leu Lys Phe Gln Asp Ala Tyr Asn Ala Ala Gly 275 280 285 Gly His Asn Ala Val Phe Asn Phe Pro Pro Asn Gly Thr His Ser Trp 290 295 300 Glu Tyr Trp Gly Ala Gln Leu Asn Ala Met Lys Gly Asp Leu Gln Ser 305 310 315 320 Ser Leu Gly Ala Gly 325 <210> SEQ ID NO 34 <211> LENGTH: 338 <212> TYPE: PRT <213> ORGANISM: Mycobacterium bovis <400> SEQUENCE: 34 Met Gln Leu Val Asp Arg Val Arg Gly Ala Val Thr Gly Met Ser Arg 1 5 10 15 Arg Leu Val Val Gly Ala Val Gly Ala Ala Leu Val Ser Gly Leu Val 20 25 30 Gly Ala Val Gly Gly Thr Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly 35 40 45 Leu Pro Val Glu Tyr Leu Gln Val Pro Ser Pro Ser Met Gly Arg Asp 50 55 60 Ile Lys Val Gln Phe Gln Ser Gly Gly Ala Asn Ser Pro Ala Leu Tyr 65 70 75 80 Leu Leu Asp Gly Leu Arg Ala Gln Asp Asp Phe Ser Gly Trp Asp Ile 85 90 95 Asn Thr Pro Ala Phe Glu Trp Tyr Asp Gln Ser Gly Leu Ser Val Val 100 105 110 Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Gln Pro 115 120 125 Ala Cys Gly Lys Ala Gly Cys Gln Thr Tyr Lys Trp Glu Thr Phe Leu 130 135 140 Thr Ser Glu Leu Pro Gly Trp Leu Gln Ala Asn Arg His Val Lys Pro 145 150 155 160 Thr Gly Ser Ala Val Val Gly Leu Ser Met Ala Ala Ser Ser Ala Leu 165 170 175 Thr Leu Ala Ile Tyr His Pro Gln Gln Phe Val Tyr Ala Gly Ala Met 180 185 190 Ser Gly Leu Leu Asp Pro Ser Gln Ala Met Gly Pro Thr Leu Ile Gly 195 200 205 Leu Ala Met Gly Asp Ala Gly Gly Tyr Lys Ala Ser Asp Met Trp Gly 210 215 220 Pro Lys Glu Asp Pro Ala Trp Gln Arg Asn Asp Pro Leu Leu Asn Val 225 230 235 240 Gly Lys Leu Ile Ala Asn Asn Thr Arg Val Trp Val Tyr Cys Gly Asn 245 250 255 Gly Lys Pro Ser Asp Leu Gly Gly Asn Asn Leu Pro Ala Lys Phe Leu 260 265 270 Glu Gly Phe Val Arg Thr Ser Asn Ile Lys Phe Gln Asp Ala Tyr Asn 275 280 285 Ala Gly Gly Gly His Asn Gly Val Phe Asp Phe Pro Asp Ser Gly Thr 290 295 300 His Ser Trp Glu Tyr Trp Gly Ala Gln Leu Asn Ala Met Lys Pro Asp 305 310 315 320 Leu Gln Arg Ala Leu Gly Ala Thr Pro Asn Thr Gly Pro Ala Pro Gln 325 330 335 Gly Ala <210> SEQ ID NO 35 <211> LENGTH: 323 <212> TYPE: PRT <213> ORGANISM: Mycobacterium bovis <400> SEQUENCE: 35 Met Thr Asp Val Ser Arg Lys Ile Arg Ala Trp Gly Arg Arg Leu Met 1 5 10 15 Ile Gly Thr Ala Ala Ala Val Val Leu Pro Gly Leu Val Gly Leu Ala 20 25 30 Gly Gly Ala Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly Leu Pro Val 35 40 45 Glu Tyr Leu Gln Val Pro Ser Pro Ser Met Gly Arg Asp Ile Lys Val 50 55 60 Gln Phe Gln Ser Gly Gly Asn Asn Ser Pro Ala Val Tyr Leu Leu Asp 65 70 75 80 Gly Leu Arg Ala Gln Asp Asp Tyr Asn Gly Trp Asp Ile Asn Thr Pro 85 90 95 Ala Phe Glu Trp Tyr Tyr Gln Ser Gly Leu Ser Ile Val Met Pro Val 100 105 110 Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Ser Pro Ala Cys Gly 115 120 125 Lys Ala Gly Cys Gln Thr Tyr Lys Trp Glu Thr Leu Leu Thr Ser Glu 130 135 140 Leu Pro Gln Trp Leu Ser Ala Asn Arg Ala Val Lys Pro Thr Gly Ser 145 150 155 160 Ala Ala Ile Gly Leu Ser Met Ala Gly Ser Ser Ala Met Ile Leu Ala 165 170 175 Ala Tyr His Pro Gln Gln Phe Ile Tyr Ala Gly Ser Leu Ser Ala Leu 180 185 190 Leu Asp Pro Ser Gln Gly Met Gly Leu Ile Gly Leu Ala Met Gly Asp 195 200 205 Ala Gly Gly Tyr Lys Ala Ala Asp Met Trp Gly Pro Ser Ser Asp Pro 210 215 220 Ala Trp Glu Arg Asn Asp Pro Thr Gln Gln Ile Pro Lys Leu Val Ala 225 230 235 240 Asn Asn Thr Arg Leu Trp Val Tyr Cys Gly Asn Gly Thr Pro Asn Glu 245 250 255 Leu Gly Gly Ala Asn Ile Pro Ala Glu Phe Leu Glu Asn Phe Val Arg 260 265 270 Ser Ser Asn Leu Lys Phe Gln Asp Ala Tyr Lys Pro Ala Gly Gly His 275 280 285 Asn Ala Val Phe Asn Phe Pro Pro Asn Gly Thr His Ser Trp Glu Tyr 290 295 300 Trp Gly Ala Gln Leu Asn Ala Met Lys Gly Asp Leu Gln Ser Ser Leu 305 310 315 320 Gly Ala Gly <210> SEQ ID NO 36 <211> LENGTH: 333 <212> TYPE: PRT <213> ORGANISM: Mycobacterium leprae <400> SEQUENCE: 36 Met Lys Phe Leu Gln Gln Met Arg Lys Leu Phe Gly Leu Ala Ala Lys 1 5 10 15 Phe Pro Ala Arg Leu Thr Ile Ala Val Ile Gly Thr Ala Leu Leu Ala 20 25 30 Gly Leu Val Gly Val Val Gly Asp Thr Ala Ile Ala Val Ala Phe Ser 35 40 45 Lys Pro Gly Leu Pro Val Glu Tyr Leu Gln Val Pro Ser Pro Ser Met 50 55 60 Gly His Asp Ile Lys Ile Gln Phe Gln Gly Gly Gly Gln His Ala Val 65 70 75 80 Tyr Leu Leu Asp Gly Leu Arg Ala Gln Glu Asp Tyr Asn Gly Trp Asp 85 90 95 Ile Asn Thr Pro Ala Phe Glu Glu Tyr Tyr His Ser Gly Leu Ser Val 100 105 110 Ile Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser Asn Trp Tyr Gln 115 120 125 Pro Ser Gln Gly Asn Gly Gln His Tyr Thr Tyr Lys Trp Glu Thr Phe 130 135 140 Leu Thr Gln Glu Met Pro Ser Trp Leu Gln Ala Asn Lys Asn Val Leu 145 150 155 160 Pro Thr Gly Asn Ala Ala Val Gly Leu Ser Met Ser Gly Ser Ser Ala 165 170 175 Leu Ile Leu Ala Ser Tyr Tyr Pro Gln Gln Phe Pro Tyr Ala Ala Ser 180 185 190 Leu Ser Gly Phe Leu Asn Pro Ser Glu Gly Trp Trp Pro Thr Met Ile 195 200 205 Gly Leu Ala Met Asn Asp Ser Gly Gly Tyr Asn Ala Asn Ser Met Trp 210 215 220 Gly Pro Ser Thr Asp Pro Ala Trp Lys Arg Asn Asp Pro Met Val Gln 225 230 235 240 Ile Pro Arg Leu Val Ala Asn Asn Thr Arg Ile Trp Val Tyr Cys Gly 245 250 255 Asn Gly Ala Pro Asn Glu Leu Gly Gly Asp Asn Ile Pro Ala Lys Phe 260 265 270 Leu Glu Ser Leu Thr Leu Ser Thr Asn Glu Ile Phe Gln Asn Thr Tyr 275 280 285 Ala Ala Ser Gly Gly Arg Asn Gly Val Phe Asn Phe Pro Pro Asn Gly 290 295 300 Thr His Ser Trp Pro Tyr Trp Asn Gln Gln Leu Val Ala Met Lys Pro 305 310 315 320 Asp Ile Gln Gln Ile Leu Asn Gly Ser Asn Asn Asn Ala 325 330 <210> SEQ ID NO 37 <211> LENGTH: 340 <212> TYPE: PRT <213> ORGANISM: Mycobacterium tuberculosis <400> SEQUENCE: 37 Met Thr Phe Phe Glu Gln Val Arg Arg Leu Arg Ser Ala Ala Thr Thr 1 5 10 15 Leu Pro Arg Arg Val Ala Ile Ala Ala Met Gly Ala Val Leu Val Tyr 20 25 30 Gly Leu Val Gly Thr Phe Gly Gly Pro Ala Thr Ala Gly Ala Phe Ser 35 40 45 Arg Pro Gly Leu Pro Val Glu Tyr Leu Gln Val Pro Ser Ala Ser Met 50 55 60 Gly Arg Asp Ile Lys Val Gln Phe Gln Gly Gly Gly Pro His Ala Val 65 70 75 80 Tyr Leu Leu Asp Gly Leu Arg Ala Gln Asp Asp Tyr Asn Gly Trp Asp 85 90 95 Ile Asn Thr Pro Ala Phe Glu Glu Tyr Tyr Gln Ser Gly Leu Ser Val 100 105 110 Ile Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Thr Asp Trp Tyr Gln 115 120 125 Pro Ser Gln Ser Asn Gly Gln Asn Tyr Thr Tyr Lys Trp Glu Thr Phe 130 135 140 Leu Thr Arg Glu Met Pro Ala Trp Leu Gln Ala Asn Lys Gly Val Ser 145 150 155 160 Pro Thr Gly Asn Ala Ala Val Gly Leu Ser Met Ser Gly Gly Ser Ala 165 170 175 Leu Ile Leu Ala Ala Tyr Tyr Pro Gln Gln Phe Pro Tyr Ala Ala Ser 180 185 190 Leu Ser Gly Phe Leu Asn Pro Ser Glu Gly Trp Trp Pro Thr Leu Ile 195 200 205 Gly Leu Ala Met Asn Asp Ser Gly Gly Tyr Asn Ala Asn Ser Met Trp 210 215 220 Gly Pro Ser Ser Asp Pro Ala Trp Lys Arg Asn Asp Pro Met Val Gln 225 230 235 240 Ile Pro Arg Leu Val Ala Asn Asn Thr Arg Ile Trp Val Tyr Cys Gly 245 250 255 Asn Gly Thr Pro Ser Asp Leu Gly Gly Asp Asn Ile Pro Ala Lys Phe 260 265 270 Leu Glu Gly Leu Thr Leu Arg Thr Asn Gln Thr Phe Arg Asp Thr Tyr 275 280 285 Ala Ala Asp Gly Gly Arg Asn Gly Val Phe Asn Phe Pro Pro Asn Gly 290 295 300 Thr His Ser Trp Pro Tyr Trp Asn Glu Gln Leu Val Ala Met Lys Ala 305 310 315 320 Asp Ile Gln His Val Leu Asn Gly Ala Thr Pro Pro Ala Ala Pro Ala 325 330 335 Ala Pro Ala Ala 340 <210> SEQ ID NO 38 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Probe made in a lab <400> SEQUENCE: 38 agcggctggg acatcaacac 20 <210> SEQ ID NO 39 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Probe made in a lab <400> SEQUENCE: 39 cagacgcggg tgttgttggc 20 <210> SEQ ID NO 40 <211> LENGTH: 1211 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 40 ggtaccggaa gctggaggat tgacggtatg agacttcttg acaggattcg tgggccttgg 60 gcacgccgtt tcggcgtcgt ggctgtcgcg acagcgatga tgcctgcttt ggtgggcctg 120 gctggagggt cggcgaccgc cggagcattc tcccggccag gtctgccggt ggagtacctg 180 atggtgcctt cgccgtcgat ggggcgcgac atcaagatcc agttccagag cggtggcgag 240 aactcgccgg ctctctacct gctcgacggc ctgcgtgcgc aggaggactt caacggctgg 300 gacatcaaca ctcaggcttt cgagtggttc ctcgacagcg gcatctccgt ggtgatgccg 360 gtcggtggcc agtccagctt ctacaccgac tggtacgccc ccgcccgtaa caagggcccg 420 accgtgacct acaagtggga gaccttcctg acccaggagc tcccgggctg gctgcaggcc 480 aaccgcgcgg tcaagccgac cggcagcggc cctgtcggtc tgtcgatggc gggttcggcc 540 gcgctgaacc tggcgacctg gcacccggag cagttcatct acgcgggctc gatgtccggc 600 ttcctgaacc cctccgaggg ctggtggccg ttcctgatca acatctcgat gggtgacgcc 660 ggcggcttca aggccgacga catgtggggc aagaccgagg ggatcccaac agcggttgga 720 cagcgcaacg atccgatgct gaacatcccg accctggtcg ccaacaacac ccgtatctgg 780 gtctactgcg gtaacggcca gcccaccgag ctcggcggcg gcgacctgcc cgccacgttc 840 ctcgaaggtc tgaccatccg caccaacgag accttccgcg acaactacat cgccgcgggt 900 ggccacaacg gtgtgttcaa cttcccggcc aacggcacgc acaactgggc gtactggggt 960 cgcgagctgc aggcgatgaa gcctgacctg caggcgcacc ttctctgacg gttgcacgaa 1020 acgaagcccc cggccgattg cggccgaggg tttcgtcgtc cggggctact gtggccgaca 1080 taaccgaaat caacgcgatg gtggctcatc aggaacgccg agggggtcat tgcgctacga 1140 cacgaggtgg gcgagcaatc cttcctgccc gacggagagg tcaacatcca cgtcgagtac 1200 tccagcgtga a 1211 <210> SEQ ID NO 41 <211> LENGTH: 485 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 41 agcggctggg acatcaacac cgccgccttc gagtggtacg tcgactcggg tctcgcggtg 60 atcatgcccg tcggcgggca gtccagcttc tacagcgact ggtacagccc ggcctgcggt 120 aaggccggct gccagaccta caagtgggag acgttcctga cccaggagct gccggcctac 180 ctcgccgcca acaagggggt cgacccgaac cgcaacgcgg ccgtcggtct gtccatggcc 240 ggttcggcgg cgctgacgct ggcgatctac cacccgcagc agttccagta cgccgggtcg 300 ctgtcgggct acctgaaccc gtccgagggg tggtggccga tgctgatcaa catctcgatg 360 ggtgacgcgg gcggctacaa ggccaacgac atgtggggtc caccgaagga cccgagcagc 420 gcctggaagc gcaacgaccc gatggtcaac atcggcaagc tggtggccaa caacaccccc 480 ctctc 485 <210> SEQ ID NO 42 <211> LENGTH: 1052 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 42 gttgatgaga aaggtgggtt gtttgccgtt atgaagttca cagagaagtg gcggggctcc 60 gcaaaggcgg cgatgcaccg ggtgggcgtt gccgatatgg ccgccgttgc gctgcccgga 120 ctgatcggct tcgccggggg ttcggcaacg gccggggcat tctcccggcc cggtcttcct 180 gtcgagtacc tcgacgtgtt ctcgccgtcg atgggccgcg acatccgggt ccagttccag 240 ggtggcggta ctcatgcggt ctacctgctc gacggtctgc gtgcccagga cgactacaac 300 ggctgggaca tcaacacccc tgcgttcgag tggttctacg agtccggctt gtcgacgatc 360 atgccggtcg gcggacagtc cagcttctac agcgactggt accagccgtc tcggggcaac 420 gggcagaact acacctacaa gtgggagacg ttcctgaccc aggagctgcc gacgtggctg 480 gaggccaacc gcggagtgtc gcgcaccggc aacgcgttcg tcggcctgtc gatggcgggc 540 agcgcggcgc tgacctacgc gatccatcac ccgcagcagt tcatctacgc ctcgtcgctg 600 tcaggcttcc tgaacccgtc cgagggctgg tggccgatgc tgatcgggct ggcgatgaac 660 gacgcaggcg gcttcaacgc cgagagcatg tggggcccgt cctcggaccc ggcgtggaag 720 cgcaacgacc cgatggtcaa catcaaccag ctggtggcca acaacacccg gatctggatc 780 tactgcggca ccggcacccc gtcggagctg gacaccggga ccccgggcca gaacctgatg 840 gccgcgcagt tcctcgaagg attcacgttg cggaccaaca tcgccttccg tgacaactac 900 atcgcagccg gcggcaccaa cggtgtcttc aacttcccgg cctcgggcac ccacagctgg 960 gggtactggg ggcagcagct gcagcagatg aagcccgaca tccagcgggt tctgggagct 1020 caggccaccg cctagccacc caccccacac cc 1052 <210> SEQ ID NO 43 <211> LENGTH: 326 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 43 Met Arg Leu Leu Asp Arg Ile Arg Gly Pro Trp Ala Arg Arg Phe Gly 1 5 10 15 Val Val Ala Val Ala Thr Ala Met Met Pro Ala Leu Val Gly Leu Ala 20 25 30 Gly Gly Ser Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly Leu Pro Val 35 40 45 Glu Tyr Leu Met Val Pro Ser Pro Ser Met Gly Arg Asp Ile Lys Ile 50 55 60 Gln Phe Gln Ser Gly Gly Glu Asn Ser Pro Ala Leu Tyr Leu Leu Asp 65 70 75 80 Gly Leu Arg Ala Gln Glu Asp Phe Asn Gly Trp Asp Ile Asn Thr Gln 85 90 95 Ala Phe Glu Trp Phe Leu Asp Ser Gly Ile Ser Val Val Met Pro Val 100 105 110 Gly Gly Gln Ser Ser Phe Tyr Thr Asp Trp Tyr Ala Pro Ala Arg Asn 115 120 125 Lys Gly Pro Thr Val Thr Tyr Lys Trp Glu Thr Phe Leu Thr Gln Glu 130 135 140 Leu Pro Gly Trp Leu Gln Ala Asn Arg Ala Val Lys Pro Thr Gly Ser 145 150 155 160 Gly Pro Val Gly Leu Ser Met Ala Gly Ser Ala Ala Leu Asn Leu Ala 165 170 175 Thr Trp His Pro Glu Gln Phe Ile Tyr Ala Gly Ser Met Ser Gly Phe 180 185 190 Leu Asn Pro Ser Glu Gly Trp Trp Pro Phe Leu Ile Asn Ile Ser Met 195 200 205 Gly Asp Ala Gly Gly Phe Lys Ala Asp Asp Met Trp Gly Lys Thr Glu 210 215 220 Gly Ile Pro Thr Ala Val Gly Gln Arg Asn Asp Pro Met Leu Asn Ile 225 230 235 240 Pro Thr Leu Val Ala Asn Asn Thr Arg Ile Trp Val Tyr Cys Gly Asn 245 250 255 Gly Gln Pro Thr Glu Leu Gly Gly Gly Asp Leu Pro Ala Thr Phe Leu 260 265 270 Glu Gly Leu Thr Ile Arg Thr Asn Glu Thr Phe Arg Asp Asn Tyr Ile 275 280 285 Ala Ala Gly Gly His Asn Gly Val Phe Asn Phe Pro Ala Asn Gly Thr 290 295 300 His Asn Trp Ala Tyr Trp Gly Arg Glu Leu Gln Ala Met Lys Pro Asp 305 310 315 320 Leu Gln Ala His Leu Leu 325 <210> SEQ ID NO 44 <211> LENGTH: 161 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 44 Ser Gly Trp Asp Ile Asn Thr Ala Ala Phe Glu Trp Tyr Val Asp Ser 1 5 10 15 Gly Leu Ala Val Ile Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser 20 25 30 Asp Trp Tyr Ser Pro Ala Cys Gly Lys Ala Gly Cys Gln Thr Tyr Lys 35 40 45 Trp Glu Thr Phe Leu Thr Gln Glu Leu Pro Ala Tyr Leu Ala Ala Asn 50 55 60 Lys Gly Val Asp Pro Asn Arg Asn Ala Ala Val Gly Leu Ser Met Ala 65 70 75 80 Gly Ser Ala Ala Leu Thr Leu Ala Ile Tyr His Pro Gln Gln Phe Gln 85 90 95 Tyr Ala Gly Ser Leu Ser Gly Tyr Leu Asn Pro Ser Glu Gly Trp Trp 100 105 110 Pro Met Leu Ile Asn Ile Ser Met Gly Asp Ala Gly Gly Tyr Lys Ala 115 120 125 Asn Asp Met Trp Gly Pro Pro Lys Asp Pro Ser Ser Ala Trp Lys Arg 130 135 140 Asn Asp Pro Met Val Asn Ile Gly Lys Leu Val Ala Asn Asn Thr Pro 145 150 155 160 Leu <210> SEQ ID NO 45 <211> LENGTH: 334 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 45 Met Lys Phe Thr Glu Lys Trp Arg Gly Ser Ala Lys Ala Ala Met His 1 5 10 15 Arg Val Gly Val Ala Asp Met Ala Ala Val Ala Leu Pro Gly Leu Ile 20 25 30 Gly Phe Ala Gly Gly Ser Ala Thr Ala Gly Ala Phe Ser Arg Pro Gly 35 40 45 Leu Pro Val Glu Tyr Leu Asp Val Phe Ser Pro Ser Met Gly Arg Asp 50 55 60 Ile Arg Val Gln Phe Gln Gly Gly Gly Thr His Ala Val Tyr Leu Leu 65 70 75 80 Asp Gly Leu Arg Ala Gln Asp Asp Tyr Asn Gly Trp Asp Ile Asn Thr 85 90 95 Pro Ala Phe Glu Trp Phe Tyr Glu Ser Gly Leu Ser Thr Ile Met Pro 100 105 110 Val Gly Gly Gln Ser Ser Phe Tyr Ser Asp Trp Tyr Gln Pro Ser Arg 115 120 125 Gly Asn Gly Gln Asn Tyr Thr Tyr Lys Trp Glu Thr Phe Leu Thr Gln 130 135 140 Glu Leu Pro Thr Trp Leu Glu Ala Asn Arg Gly Val Ser Arg Thr Gly 145 150 155 160 Asn Ala Phe Val Gly Leu Ser Met Ala Gly Ser Ala Ala Leu Thr Tyr 165 170 175 Ala Ile His His Pro Gln Gln Phe Ile Tyr Ala Ser Ser Leu Ser Gly 180 185 190 Phe Leu Asn Pro Ser Glu Gly Trp Trp Pro Met Leu Ile Gly Leu Ala 195 200 205 Met Asn Asp Ala Gly Gly Phe Asn Ala Glu Ser Met Trp Gly Pro Ser 210 215 220 Ser Asp Pro Ala Trp Lys Arg Asn Asp Pro Met Val Asn Ile Asn Gln 225 230 235 240 Leu Val Ala Asn Asn Thr Arg Ile Trp Ile Tyr Cys Gly Thr Gly Thr 245 250 255 Pro Ser Glu Leu Asp Thr Gly Thr Pro Gly Gln Asn Leu Met Ala Ala 260 265 270 Gln Phe Leu Glu Gly Phe Thr Leu Arg Thr Asn Ile Ala Phe Arg Asp 275 280 285 Asn Tyr Ile Ala Ala Gly Gly Thr Asn Gly Val Phe Asn Phe Pro Ala 290 295 300 Ser Gly Thr His Ser Trp Gly Tyr Trp Gly Gln Gln Leu Gln Gln Met 305 310 315 320 Lys Pro Asp Ile Gln Arg Val Leu Gly Ala Gln Ala Thr Ala 325 330 <210> SEQ ID NO 46 <211> LENGTH: 795 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 46 ctgccgcggg tttgccatct cttgggtcct gggtcgggag gccatgttct gggtaacgat 60 ccggtaccgt ccggcgatgt gaccaacatg cgaacagcga caacgaagct aggagcggcg 120 ctcggcgcag cagcattggt ggccgccacg gggatggtca gcgcggcgac ggcgaacgcc 180 caggaagggc accaggtccg ttacacgctc acctcggccg gcgcttacga gttcgacctg 240 ttctatctga cgacgcagcc gccgagcatg caggcgttca acgccgacgc gtatgcgttc 300 gccaagcggg agaaggtcag cctcgccccg ggtgtgccgt gggtcttcga aaccacgatg 360 gccgacccga actgggcgat ccttcaggtc agcagcacca cccgcggtgg gcaggccgcc 420 ccgaacgcgc actgcgacat cgccgtcgat ggccaggagg tgctcagcca gcacgacgac 480 ccctacaacg tgcggtgcca gctcggtcag tggtgagtca cctcgccgag agtccggcca 540 gcgccggcgg cagcggctcg cggtgcagca ccccgaggcg ctgggtcgcg cgggtcagcg 600 cgacgtaaag atcgctggcc ccgcgcggcc cctcggcgag gatctgctcc gggtagacca 660 ccagcacggc gtctaactcc agacccttgg tctgcgtggg tgccaccgcg cccgggacac 720 cgggcgggcc gatcaccacg ctggtgccct cccggtccgc ctccgcacgc acgaaatcgt 780 cgatggcacc ggcga 795 <210> SEQ ID NO 47 <211> LENGTH: 142 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 47 Met Arg Thr Ala Thr Thr Lys Leu Gly Ala Ala Leu Gly Ala Ala Ala 1 5 10 15 Leu Val Ala Ala Thr Gly Met Val Ser Ala Ala Thr Ala Asn Ala Gln 20 25 30 Glu Gly His Gln Val Arg Tyr Thr Leu Thr Ser Ala Gly Ala Tyr Glu 35 40 45 Phe Asp Leu Phe Tyr Leu Thr Thr Gln Pro Pro Ser Met Gln Ala Phe 50 55 60 Asn Ala Asp Ala Tyr Ala Phe Ala Lys Arg Glu Lys Val Ser Leu Ala 65 70 75 80 Pro Gly Val Pro Trp Val Phe Glu Thr Thr Met Ala Asp Pro Asn Trp 85 90 95 Ala Ile Leu Gln Val Ser Ser Thr Thr Arg Gly Gly Gln Ala Ala Pro 100 105 110 Asn Ala His Cys Asp Ile Ala Val Asp Gly Gln Glu Val Leu Ser Gln 115 120 125 His Asp Asp Pro Tyr Asn Val Arg Cys Gln Leu Gly Gln Trp 130 135 140 <210> SEQ ID NO 48 <211> LENGTH: 300 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 48 gccagtgcgc caacggtttt catcgatgcc gcacacaacc ccggtgggcc ctgcgcttgc 60 cgaaggctgc gcgacgagtt cgacttccgg tatctcgtcg gcgtcgtctc ggtgatgggg 120 gacaaggacg tggacgggat ccgccaggac ccgggcgtgc cggacgggcg cggtctcgca 180 ctgttcgtct cgggcgacaa ccttcgaaag ggtgcggcgc tcaacacgat ccagatcgcc 240 gagctgctgg ccgcccagtt gtaagtgttc cgccgaaatt gcattccacg ccgataatcg 300 <210> SEQ ID NO 49 <211> LENGTH: 563 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 49 ggatcctcgg ccggctcaag agtccgcgcc gaggtggatg tgacgctgga cggctacgag 60 ttcagtcggg cctgcgaggc gctgtaccac ttcgcctggg acgagttctg cgactggtat 120 gtcgagcttg ccaaagtgca actgggtgaa ggtttctcgc acaccacggc cgtgttggcc 180 accgtgctcg atgtgctgct caagcttctg cacccggtca tgccgttcgt caccgaggtg 240 ctgtggaagg ccctgaccgg gcgggccggc gcgagcgaac gtctgggaaa tgtggagtca 300 ctggtcgtcg cggactggcc cacgcccacc ggatacgcgc tggatcaggc tgccgcacaa 360 cggatcgccg acacccagaa gttgatcacc gaggtgcgcc ggttccgcag cgatcagggt 420 ctggccgacc gccagcgggt gcctgcccgg ttgtccggca tcgacaccgc gggtctggac 480 gcccatgtcc cggcggtgcg cgcgctggcc tggcttgacc gagggtgatg agggcttcac 540 cgcgtccgaa tcggtcgagg tgc 563 <210> SEQ ID NO 50 <211> LENGTH: 434 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 50 gggccgggcc cgaggatgag caagttcgaa gtcgtcaccg ggatggcgtt cgcggctttc 60 gccgacgcgc ccatcgacgt cgccgtcgtc gaggtcgggc tcggtggtcg ctgggacgcg 120 acgaacgtgg tgaacgcacc ggtcgcggtc atcaccccga tcggggtgga ccacaccgac 180 tacctcggtg acacgatcgc cgagatcgcc ggggagaagg ccggaaatca tcacccgcca 240 gccgacgacc tggtgccgac cgacaccgtc gccgtgctgg cgcggcaggt tcccgaggcc 300 atggaggtgc tgctggccca ggcggtgcgc tcggatgcgg ctgtagcgcg cgaggattcg 360 gagtgcgcgg tgctgggccg tcaggtcgcc atcggcggca gctgctccgg ttgcaggggc 420 tcggtggcgt ctac 434 <210> SEQ ID NO 51 <211> LENGTH: 438 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 51 ggatcccact cccgcgccgg cggcggccag ctggtacggc cattccagcg tgctgatcga 60 ggtcgacggc taccgcgtgc tggccgaccc ggtgtggagc aacagatgtt cgccctcacg 120 ggcggtcgga ccgcagcgca tgcacgacgt cccggtgccg ctggaggcgc ttcccgccgt 180 ggacgcggtg gtgatcgcca acgaccacta cgaccacctc gacatcgaca ccatcgtcgc 240 gttggcgcac acccagcggg ccccgttcgt ggtgccgttg ggcatcggcg cacacctgcg 300 caagtggggc gtccccgagg cgcggatcgt cgagttggac tggcacgaag cccaccgcat 360 cgacgacctg acgctggtct gcacccccgc ccggcacttc tccggccggt tgttctcccg 420 cgactcgacg ctgtgggc 438 <210> SEQ ID NO 52 <211> LENGTH: 87 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 52 Ala Ser Ala Pro Thr Val Phe Ile Asp Ala Ala His Asn Pro Gly Gly 1 5 10 15 Pro Cys Ala Cys Arg Arg Leu Arg Asp Glu Phe Asp Phe Arg Tyr Leu 20 25 30 Val Gly Val Val Ser Val Met Gly Asp Lys Asp Val Asp Gly Ile Arg 35 40 45 Gln Asp Pro Gly Val Pro Asp Gly Arg Gly Leu Ala Leu Phe Val Ser 50 55 60 Gly Asp Asn Leu Arg Lys Gly Ala Ala Leu Asn Thr Ile Gln Ile Ala 65 70 75 80 Glu Leu Leu Ala Ala Gln Leu 85 <210> SEQ ID NO 53 <211> LENGTH: 175 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 53 Gly Ser Ser Ala Gly Ser Arg Val Arg Ala Glu Val Asp Val Thr Leu 1 5 10 15 Asp Gly Tyr Glu Phe Ser Arg Ala Cys Glu Ala Leu Tyr His Phe Ala 20 25 30 Trp Asp Glu Phe Cys Asp Trp Tyr Val Glu Leu Ala Lys Val Gln Leu 35 40 45 Gly Glu Gly Phe Ser His Thr Thr Ala Val Leu Ala Thr Val Leu Asp 50 55 60 Val Leu Leu Lys Leu Leu His Pro Val Met Pro Phe Val Thr Glu Val 65 70 75 80 Leu Trp Lys Ala Leu Thr Gly Arg Ala Gly Ala Ser Glu Arg Leu Gly 85 90 95 Asn Val Glu Ser Leu Val Val Ala Asp Trp Pro Thr Pro Thr Gly Tyr 100 105 110 Ala Leu Asp Gln Ala Ala Ala Gln Arg Ile Ala Asp Thr Gln Lys Leu 115 120 125 Ile Thr Glu Val Arg Arg Phe Arg Ser Asp Gln Gly Leu Ala Asp Arg 130 135 140 Gln Arg Val Pro Ala Arg Leu Ser Gly Ile Asp Thr Ala Gly Leu Asp 145 150 155 160 Ala His Val Pro Ala Val Arg Ala Leu Ala Trp Leu Asp Arg Gly 165 170 175 <210> SEQ ID NO 54 <211> LENGTH: 144 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 54 Gly Pro Gly Pro Arg Asn Ser Lys Phe Glu Val Val Thr Gly Met Ala 1 5 10 15 Phe Ala Ala Phe Ala Asp Ala Pro Ile Asp Val Ala Val Val Glu Val 20 25 30 Gly Leu Gly Gly Arg Trp Asp Ala Thr Asn Val Val Asn Ala Pro Val 35 40 45 Ala Val Ile Thr Pro Ile Gly Val Asp His Thr Asp Tyr Leu Gly Asp 50 55 60 Thr Ile Ala Glu Ile Ala Gly Glu Lys Ala Gly Asn His His Pro Pro 65 70 75 80 Ala Asp Asp Leu Val Pro Thr Asp Thr Val Ala Val Leu Ala Arg Gln 85 90 95 Val Pro Glu Ala Asn Glu Val Leu Leu Ala Gln Ala Val Arg Ser Asp 100 105 110 Ala Ala Val Ala Arg Glu Asp Ser Glu Cys Ala Val Leu Gly Arg Gln 115 120 125 Val Ala Ile Gly Gly Ser Cys Ser Gly Cys Arg Gly Ser Val Ala Ser 130 135 140 <210> SEQ ID NO 55 <211> LENGTH: 145 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 55 Asp Pro Thr Pro Ala Pro Ala Ala Ala Ser Trp Tyr Gly His Ser Ser 1 5 10 15 Val Leu Ile Glu Val Asp Gly Tyr Arg Val Leu Ala Asp Pro Val Trp 20 25 30 Ser Asn Arg Cys Ser Pro Ser Arg Ala Val Gly Pro Gln Arg Met His 35 40 45 Asp Val Pro Val Pro Leu Glu Ala Leu Pro Ala Val Asp Ala Val Val 50 55 60 Ile Ser Asn Asp His Tyr Asp His Leu Asp Ile Asp Thr Ile Val Ala 65 70 75 80 Leu Ala His Thr Gln Arg Ala Pro Phe Val Val Pro Leu Gly Ile Gly 85 90 95 Ala His Leu Arg Lys Trp Gly Val Pro Glu Ala Arg Ile Val Glu Leu 100 105 110 Asp Trp His Glu Ala His Arg Ile Asp Asp Leu Thr Leu Val Cys Thr 115 120 125 Pro Ala Arg His Phe Ser Gly Arg Leu Phe Ser Arg Asp Ser Thr Leu 130 135 140 Trp 145 <210> SEQ ID NO 56 <211> LENGTH: 10 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <223> OTHER INFORMATION: Residue can be either Gly, Ile, Leu or Val <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <223> OTHER INFORMATION: Residue can be either Ile, Leu, Gly, or Ala <221> NAME/KEY: UNSURE <222> LOCATION: (5)...(5) <221> NAME/KEY: UNSURE <222> LOCATION: (9)...(9) <400> SEQUENCE: 56 Xaa Xaa Ala Pro Xaa Gly Asp Ala Xaa Arg 1 5 10 <210> SEQ ID NO 57 <211> LENGTH: 8 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <223> OTHER INFORMATION: Residue can be either Ile or Leu <400> SEQUENCE: 57 Pro Glu Ala Glu Ala Asn Xaa Arg 1 5 <210> SEQ ID NO 58 <211> LENGTH: 11 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (4)...(4) <223> OTHER INFORMATION: Residue can be either Gln or Gly <221> NAME/KEY: UNSURE <222> LOCATION: (5)...(5) <223> OTHER INFORMATION: Residue can be either Gly or Gln <400> SEQUENCE: 58 Thr Ala Asn Xaa Xaa Glu Tyr Tyr Asp Asn Arg 1 5 10 <210> SEQ ID NO 59 <211> LENGTH: 34 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 59 Asn Ser Pro Arg Ala Glu Ala Glu Ala Asn Leu Arg Gly Tyr Phe Thr 1 5 10 15 Ala Asn Pro Ala Glu Tyr Tyr Asp Leu Arg Gly Ile Leu Ala Pro Ile 20 25 30 Gly Asp <210> SEQ ID NO 60 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 60 ccggtgggcc cgggctgcgc 20 <210> SEQ ID NO 61 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 61 tggccggcca ccacgtggta 20 <210> SEQ ID NO 62 <211> LENGTH: 313 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 62 gccggtgggc ccgggctgcg cggaatacgc ggcagccaat cccactgggc cggcctcggt 60 gcagggaatg tcgcaggacc cggtcgcggt ggcggcctcg aacaatccgg agttgacaac 120 gctgtacggc tgcactgtcg ggccagctca atccgcaagt aaacctggtg gacaccctca 180 acagcggtca gtacacggtg ttcgcaccga ccaacgcggc atttagcaag ctgccggcat 240 ccacgatcga cgagctcaag accaattcgt cactgctgac cagcatcctg acctaccacg 300 tggtggccgg cca 313 <210> SEQ ID NO 63 <211> LENGTH: 18 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(17) <400> SEQUENCE: 63 Glu Pro Ala Gly Pro Leu Pro Xaa Tyr Asn Glu Arg Leu His Thr Leu 1 5 10 15 Xaa Gln <210> SEQ ID NO 64 <211> LENGTH: 25 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (21)...(21) <400> SEQUENCE: 64 Gly Leu Asp Asn Glu Leu Ser Leu Val Asp Gly Gln Gly Arg Thr Leu 1 5 10 15 Thr Val Gln Gln Xaa Asp Thr Phe Leu 20 25 <210> SEQ ID NO 65 <211> LENGTH: 26 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (3)...(3) <221> NAME/KEY: UNSURE <222> LOCATION: (21)...(22) <221> NAME/KEY: UNSURE <222> LOCATION: (24)...(24) <400> SEQUENCE: 65 Asp Pro Xaa Pro Asp Ile Glu Val Glu Phe Ala Arg Gly Thr Gly Ala 1 5 10 15 Glu Pro Gly Leu Xaa Xaa Val Xaa Asp Ala 20 25 <210> SEQ ID NO 66 <211> LENGTH: 32 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 66 accgccctcg agttctcccg gccaggtctg cc 32 <210> SEQ ID NO 67 <211> LENGTH: 32 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 67 aagcacgagc tcagtctctt ccacgcggac gt 32 <210> SEQ ID NO 68 <211> LENGTH: 30 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 68 catggatcca ttctcccggc ccggtcttcc 30 <210> SEQ ID NO 69 <211> LENGTH: 26 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 69 tttgaattct aggcggtggc ctgagc 26 <210> SEQ ID NO 70 <211> LENGTH: 161 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 70 Ser Gly Trp Asp Ile Asn Thr Ala Ala Phe Glu Trp Tyr Val Asp Ser 1 5 10 15 Gly Leu Ala Val Ile Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser 20 25 30 Asp Trp Tyr Ser Pro Ala Cys Gly Lys Ala Gly Cys Gln Thr Tyr Lys 35 40 45 Trp Glu Thr Phe Leu Thr Gln Glu Leu Pro Ala Tyr Leu Ala Ala Asn 50 55 60 Lys Gly Val Asp Pro Asn Arg Asn Ala Ala Val Gly Leu Ser Met Ala 65 70 75 80 Gly Ser Ala Ala Leu Thr Leu Ala Ile Tyr His Pro Gln Gln Phe Gln 85 90 95 Tyr Ala Gly Ser Leu Ser Gly Tyr Leu Asn Pro Ser Glu Gly Trp Trp 100 105 110 Pro Met Leu Ile Asn Ile Ser Met Gly Asp Ala Gly Gly Tyr Lys Ala 115 120 125 Asn Asp Met Trp Gly Arg Thr Glu Asp Pro Ser Ser Ala Trp Lys Arg 130 135 140 Asn Asp Pro Met Val Asn Ile Gly Lys Leu Val Ala Asn Asn Thr Pro 145 150 155 160 Leu <210> SEQ ID NO 71 <211> LENGTH: 33 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 71 gagagactcg agaacgccca ggaagggcac cag 33 <210> SEQ ID NO 72 <211> LENGTH: 32 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 72 gagagactcg agtgactcac cactgaccga gc 32 <210> SEQ ID NO 73 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <221> NAME/KEY: unsure <222> LOCATION: (3)...(3) <221> NAME/KEY: unsure <222> LOCATION: (6)...(6) <221> NAME/KEY: unsure <222> LOCATION: (9)...(9) <221> NAME/KEY: unsure <222> LOCATION: (15)...(15) <400> SEQUENCE: 73 ggngcngcnc argcngarcc 20 <210> SEQ ID NO 74 <211> LENGTH: 825 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 74 ttggatccca ctcccgcgcc ggcggcggcc agctggtacg gccattccag cgtgctgatc 60 gaggtcgacg gctaccgcgt gctggccgac ccggtgtgga gcaacagatg ttcgccctca 120 cgggcggtcg gaccgcagcg catgcacgac gtcccggtgc cgctggaggc gcttcccgcc 180 gtggacgcgg tggtgatcag ccacgaccac tacgaccacc tcgacatcga caccatcgtc 240 gcgttggcgc acacccagcg ggccccgttc gtggtgccgt tgggcatcgg cgcacacctg 300 cgcaagtggg gcgtccccga ggcgcggatc gtcgagttgg actggcacga agcccaccgc 360 atagacgacc tgacgctggt ctgcaccccc gcccggcact tctccggacg gttgttctcc 420 cgcgactcga cgctgtgggc gtcgtgggtg gtcaccggct cgtcgcacaa ggcgttcttc 480 ggtggcgaca ccggatacac gaagagcttc gccgagatcg gcgacgagta cggtccgttc 540 gatctgaccc tgctgccgat cggggcctac catcccgcgt tcgccgacat ccacatgaac 600 cccgaggagg cggtgcgcgc ccatctggac ctgaccgagg tggacaacag cctgatggtg 660 cccatccact gggcgacatt ccgcctcgcc ccgcatccgt ggtccgagcc cgccgaacgc 720 ctgctgaccg ctgccgacgc cgagcgggta cgcctgaccg tgccgattcc cggtcagcgg 780 gtggacccgg agtcgacgtt cgacccgtgg tggcggttct gaacc 825 <210> SEQ ID NO 75 <211> LENGTH: 273 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 75 Leu Asp Pro Thr Pro Ala Pro Ala Ala Ala Ser Trp Tyr Gly His Ser 1 5 10 15 Ser Val Leu Ile Glu Val Asp Gly Tyr Arg Val Leu Ala Asp Pro Val 20 25 30 Trp Ser Asn Arg Cys Ser Pro Ser Arg Ala Val Gly Pro Gln Arg Met 35 40 45 His Asp Val Pro Val Pro Leu Glu Ala Leu Pro Ala Val Asp Ala Val 50 55 60 Val Ile Ser His Asp His Tyr Asp His Leu Asp Ile Asp Thr Ile Val 65 70 75 80 Ala Leu Ala His Thr Gln Arg Ala Pro Phe Val Val Pro Leu Gly Ile 85 90 95 Gly Ala His Leu Arg Lys Trp Gly Val Pro Glu Ala Arg Ile Val Glu 100 105 110 Leu Asp Trp His Glu Ala His Arg Ile Asp Asp Leu Thr Leu Val Cys 115 120 125 Thr Pro Ala Arg His Phe Ser Gly Arg Leu Phe Ser Arg Asp Ser Thr 130 135 140 Leu Trp Ala Ser Trp Val Val Thr Gly Ser Ser His Lys Ala Phe Phe 145 150 155 160 Gly Gly Asp Thr Gly Tyr Thr Lys Ser Phe Ala Glu Ile Gly Asp Glu 165 170 175 Tyr Gly Pro Phe Asp Leu Thr Leu Leu Pro Ile Gly Ala Tyr His Pro 180 185 190 Ala Phe Ala Asp Ile His Met Asn Pro Glu Glu Ala Val Arg Ala His 195 200 205 Leu Asp Leu Thr Glu Val Asp Asn Ser Leu Met Val Pro Ile His Trp 210 215 220 Ala Thr Phe Arg Leu Ala Pro His Pro Trp Ser Glu Pro Ala Glu Arg 225 230 235 240 Leu Leu Thr Ala Ala Asp Ala Glu Arg Val Arg Leu Thr Val Pro Ile 245 250 255 Pro Gly Gln Arg Val Asp Pro Glu Ser Thr Phe Asp Pro Trp Trp Arg 260 265 270 Phe <210> SEQ ID NO 76 <211> LENGTH: 10 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 76 Ala Lys Thr Ile Ala Tyr Asp Glu Glu Ala 1 5 10 <210> SEQ ID NO 77 <211> LENGTH: 337 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 77 gatccctaca tcctgctggt cagctccaag gtgtcgaccg tcaaggatct gctcccgctg 60 ctggagaagg tcatccaggc cggcaagccg ctgctgatca tcgccgagga cgtcgagggc 120 gaggccctgt ccacgctggt ggtcaacaag atccgcggca ccttcaagtc cgtcgccgtc 180 aaggctccgg gcttcggtga ccgccgcaag gcgatgctgc aggacatggc catcctcacc 240 ggtggtcagg tcgtcagcga aagagtcggg ctgtccctgg agaccgccga cgtctcgctg 300 ctgggccagg cccgcaaggt cgtcgtcacc aaggaca 337 <210> SEQ ID NO 78 <211> LENGTH: 112 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 78 Asp Pro Tyr Ile Leu Leu Val Ser Ser Lys Val Ser Thr Val Lys Asp 1 5 10 15 Leu Leu Pro Leu Leu Glu Lys Val Ile Gln Ala Gly Lys Pro Leu Leu 20 25 30 Ile Ile Ala Glu Asp Val Glu Gly Glu Ala Leu Ser Thr Leu Val Val 35 40 45 Asn Lys Ile Arg Gly Thr Phe Lys Ser Val Ala Val Lys Ala Pro Gly 50 55 60 Phe Gly Asp Arg Arg Lys Ala Met Leu Gln Asp Met Ala Ile Leu Thr 65 70 75 80 Gly Gly Gln Val Val Ser Glu Arg Val Gly Leu Ser Leu Glu Thr Ala 85 90 95 Asp Val Ser Leu Leu Gly Gln Ala Arg Lys Val Val Val Thr Lys Asp 100 105 110 <210> SEQ ID NO 79 <211> LENGTH: 360 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 79 ccgtacgaga agatcggcgc tgagctggtc aaagaggtcg ccaagaagac cgacgacgtc 60 gcgggcgacg gcaccaccac cgccaccgtg ctcgctcagg ctctggttcg cgaaggcctg 120 cgcaacgtcg cagccggcgc caacccgctc ggcctcaagc gtggcatcga gaaggctgtc 180 gaggctgtca cccagtcgct gctgaagtcg gccaaggagg tcgagaccaa ggagcagatt 240 tctgccaccg cggcgatctc cgccggcgac acccagatcg gcgagctcat cgccgaggcc 300 atggacaagg tcggcaacga gggtgtcatc accgtcgagg agtcgaacac cttcggcctg 360 <210> SEQ ID NO 80 <211> LENGTH: 120 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 80 Pro Tyr Glu Lys Ile Gly Ala Glu Leu Val Lys Glu Val Ala Lys Lys 1 5 10 15 Thr Asp Asp Val Ala Gly Asp Gly Thr Thr Thr Ala Thr Val Leu Ala 20 25 30 Gln Ala Leu Val Arg Glu Gly Leu Arg Asn Val Ala Ala Gly Ala Asn 35 40 45 Pro Leu Gly Leu Lys Arg Gly Ile Glu Lys Ala Val Glu Ala Val Thr 50 55 60 Gln Ser Leu Leu Lys Ser Ala Lys Glu Val Glu Thr Lys Glu Gln Ile 65 70 75 80 Ser Ala Thr Ala Ala Ile Ser Ala Gly Asp Thr Gln Ile Gly Glu Leu 85 90 95 Ile Ala Glu Ala Met Asp Lys Val Gly Asn Glu Gly Val Ile Thr Val 100 105 110 Glu Glu Ser Asn Thr Phe Gly Leu 115 120 <210> SEQ ID NO 81 <211> LENGTH: 43 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 81 actgacgctg aggagcgaaa gcgtggggag cgaacaggat tag 43 <210> SEQ ID NO 82 <211> LENGTH: 43 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 82 cgacaaggaa cttcgctacc ttaggaccgt catagttacg ggc 43 <210> SEQ ID NO 83 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 83 aaaaaaaaaa aaaaaaaaaa 20 <210> SEQ ID NO 84 <211> LENGTH: 31 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 84 ggaaggaagc ggccgctttt tttttttttt t 31 <210> SEQ ID NO 85 <211> LENGTH: 31 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 85 gagagagagc ccgggcatgc tsctsctsct s 31 <210> SEQ ID NO 86 <211> LENGTH: 238 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 86 ctcgatgaac cgctcggagc gctcgacctg aagctgcgcc acgtcatgca gttcgagctc 60 aagcgcatcc agcgggaggt cgggatcacg ttcatctacg tgacccacga ccaggaagag 120 gcgctcacga tgagtgaccg catcgcggtg atgaacgccg gcaacgtcga acagatcggc 180 agcccgaccg agatctacga ccgtcccgcg acggtgttcg tcgccagctt catcgaat 238 <210> SEQ ID NO 87 <211> LENGTH: 79 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 87 Leu Asp Glu Pro Leu Gly Ala Leu Asp Leu Lys Leu Arg His Val Met 1 5 10 15 Gln Phe Glu Leu Lys Arg Ile Gln Arg Glu Val Gly Ile Thr Phe Ile 20 25 30 Tyr Val Thr His Asp Gln Glu Glu Ala Leu Thr Met Ser Asp Arg Ile 35 40 45 Ala Val Met Asn Ala Gly Asn Val Glu Gln Ile Gly Ser Pro Thr Glu 50 55 60 Ile Tyr Asp Arg Pro Ala Thr Val Phe Val Ala Ser Phe Ile Glu 65 70 75 <210> SEQ ID NO 88 <211> LENGTH: 1518 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 88 cactcgccat gggtgttaca ataccccacc agttcctcga agtaaacgaa cagaaccgtg 60 acatccagct gagaaaatat tcacagcgac gaagcccggc cgatgcctga tggggtccgg 120 catcagtaca gcgcgctttc ctgcgcggat tctattgtcg agtccggggt gtgacgaagg 180 aatccattgt cgaaatgtaa attcgttgcg gaatcacttg cataggtccg tcagatccgc 240 gaaggtttac cccacagcca cgacggctgt ccccgaggag gacctgccct gaccggcaca 300 cacatcaccg ctgcagaacc tgcagaacag acggcggatt ccgcggcacc gcccaagggc 360 gcgccggtga tcgagatcga ccatgtcacg aagcgcttcg gcgactacct ggccgtcgcg 420 gacgcagact tctccatcgc gcccggggag ttcttctcca tgctcggccc gtccgggtgt 480 gggaagacga ccacgttgcg catgatcgcg ggattcgaga ccccgactga aggggcgatc 540 cgcctcgaag gcgccgacgt gtcgaggacc ccacccaaca agcgcaacgt caacacggtg 600 ttccagcact acgcgctgtt cccgcacatg acggtctggg acaacgtcgc gtacggcccg 660 cgcagcaaga aactcggcaa aggcgaggtc cgcaagcgcg tcgacgagct gctggagatc 720 gtccggctga ccgaatttgc cgagcgcagg cccgcccagc tgtccggcgg gcagcagcag 780 cgggtggcgt tggcccgggc actggtgaac taccccagcg cgctgctgct cgatgaaccg 840 ctcggagcgc tcgacctgaa gctgcgccac gtcatgcagt tcgagctcaa gcgcatccag 900 cgggaggtcg ggatcacgtt catctacgtg acccacgacc aggaagaggc gctcacgatg 960 agtgaccgca tcgcggtgat gaacgccggc aacgtcgaac agatcggcag cccgaccgag 1020 atctacgacc gtcccgcgac ggtgttcgtc gccagcttca tcggacaggc caacctctgg 1080 gcgggccggt gcaccggccg ctccaaccgc gattacgtcg agatcgacgt tctcggctcg 1140 acgctgaagg cacgcccggg cgagaccacg atcgagcccg gcgggcacgc caccctgatg 1200 gtgcgtccgg aacgcatccg ggtcaccccg ggctcccagg acgcgccgac cggtgacgtc 1260 gcctgcgtgc gtgccaccgt caccgacctg accttccaag gtccggtggt gcggctctcg 1320 ctggccgctc cggacgactc gaccgtgatc gcccacgtcg gccccgagca ggatctgccg 1380 ctgctgcgcc ccggcgacga cgtgtacgtc agctgggcac cggaagcctc cctggtgctt 1440 cccggcgacg acatccccac caccgaggac ctcgaagaga tgctcgacga ctcctgagtc 1500 acgcttcccg attgccga 1518 <210> SEQ ID NO 89 <211> LENGTH: 376 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 89 Val Ile Glu Ile Asp His Val Thr Lys Arg Phe Gly Asp Tyr Leu Ala 1 5 10 15 Val Ala Asp Ala Asp Phe Ser Ile Ala Pro Gly Glu Phe Phe Ser Met 20 25 30 Leu Gly Pro Ser Gly Cys Gly Lys Thr Thr Thr Leu Arg Met Ile Ala 35 40 45 Gly Phe Glu Thr Pro Thr Glu Gly Ala Ile Arg Leu Glu Gly Ala Asp 50 55 60 Val Ser Arg Thr Pro Pro Asn Lys Arg Asn Val Asn Thr Val Phe Gln 65 70 75 80 His Tyr Ala Leu Phe Pro His Met Thr Val Trp Asp Asn Val Ala Tyr 85 90 95 Gly Pro Arg Ser Lys Lys Leu Gly Lys Gly Glu Val Arg Lys Arg Val 100 105 110 Asp Glu Leu Leu Glu Ile Val Arg Leu Thr Glu Phe Ala Glu Arg Arg 115 120 125 Pro Ala Gln Leu Ser Gly Gly Gln Gln Gln Arg Val Ala Leu Ala Arg 130 135 140 Ala Leu Val Asn Tyr Pro Ser Ala Leu Leu Leu Asp Glu Pro Leu Gly 145 150 155 160 Ala Leu Asp Leu Lys Leu Arg His Val Met Gln Phe Glu Leu Lys Arg 165 170 175 Ile Gln Arg Glu Val Gly Ile Thr Phe Ile Tyr Val Thr His Asp Gln 180 185 190 Glu Glu Ala Leu Thr Met Ser Asp Arg Ile Ala Val Met Asn Ala Gly 195 200 205 Asn Val Glu Gln Ile Gly Ser Pro Thr Glu Ile Tyr Asp Arg Pro Ala 210 215 220 Thr Val Phe Val Ala Ser Phe Ile Gly Gln Ala Asn Leu Trp Ala Gly 225 230 235 240 Arg Cys Thr Gly Arg Ser Asn Arg Asp Tyr Val Glu Ile Asp Val Leu 245 250 255 Gly Ser Thr Leu Lys Ala Arg Pro Gly Glu Thr Thr Ile Glu Pro Gly 260 265 270 Gly His Ala Thr Leu Met Val Arg Pro Glu Arg Ile Arg Val Thr Pro 275 280 285 Gly Ser Gln Asp Ala Pro Thr Gly Asp Val Ala Cys Val Arg Ala Thr 290 295 300 Val Thr Asp Leu Thr Phe Gln Gly Pro Val Val Arg Leu Ser Leu Ala 305 310 315 320 Ala Pro Asp Asp Ser Thr Val Ile Ala His Val Gly Pro Glu Gln Asp 325 330 335 Leu Pro Leu Leu Arg Pro Gly Asp Asp Val Tyr Val Ser Trp Ala Pro 340 345 350 Glu Ala Ser Leu Val Leu Pro Gly Asp Asp Ile Pro Thr Thr Glu Asp 355 360 365 Leu Glu Glu Met Leu Asp Asp Ser 370 375 <210> SEQ ID NO 90 <211> LENGTH: 33 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 90 gagagactcg aggtgatcga gatcgaccat gtc 33 <210> SEQ ID NO 91 <211> LENGTH: 31 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 91 agagactcga gcaatcggga agcgtgactc a 31 <210> SEQ ID NO 92 <211> LENGTH: 323 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 92 gtcgactaca aagaagactt caacgacaac gagcagtggt tcgccaaggt caaggagccg 60 ttgtcgcgca agcaggacat aggcgccgac ctggtgatcc ccaccgagtt catggccgcg 120 cgcgtcaagg gcctgggatg gctcaatgag atcagcgaag ccggcgtgcc caatcgcaag 180 aatctgcgtc aggacctgtt ggactcgagc atcgacgagg gccgcaagtt caccgcgccg 240 tacatgaccg gcatggtcgg tctcgcctac aacaaggcag ccaccggacg cgatatccgc 300 accatcgacg acctctggga tcc 323 <210> SEQ ID NO 93 <211> LENGTH: 1341 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 93 ccccaccccc ttccctggag ccgacgaaag gcacccgcac atgtcccgtg acatcgatcc 60 ccacctgctg gcccgaatga ccgcacgccg caccttgcgt cgccgcttca tcggcggtgg 120 cgccgcggcc gccgcgggcc tgaccctcgg ttcgtcgttc ctggcggcgt gcgggtccga 180 cagtgggacc tcgagcacca cgtcacagga cagcggcccc gccagcggcg ccctgcgcgt 240 ctccaactgg ccgctctata tggccgacgg tttcatcgca gcgttccaga ccgcctcggg 300 catcacggtc gactacaaag aagacttcaa cgacaacgag cagtggttcg ccaaggtcaa 360 ggagccgttg tcgcgcaagc aggacatagg cgccgacctg gtgatcccca ccgagttcat 420 ggccgcgcgc gtcaagggcc tgggatggct caatgagatc agcgaagccg gcgtgcccaa 480 tcgcaagaat ctgcgtcagg acctgttgga ctcgagcatc gacgagggcc gcaagttcac 540 cgcgccgtac atgaccggca tggtcggtct cgcctacaac aaggcagcca ccggacgcga 600 tatccgcacc atcgacgacc tctgggatcc cgcgttcaag ggccgcgtca gtctgttctc 660 cgacgtccag gacggcctcg gcatgatcat gctctcgcag ggcaactcgc cggagaatcc 720 gaccaccgag tccattcagc aggcggtcga tctggtccgc gaacagaacg acagggggtc 780 agatccgtcg cttcaccggc aacgactacg ccgacgacct ggccgcagaa acatcgccat 840 cgcgcaggcg tactccggtg acgtcgtgca gctgcaggcg gacaaccccg atctgcagtt 900 catcgttccc gaatccggcg gcgactggtt cgtcgacacg atggtgatcc cgtacaccac 960 gcagaaccag aaggccgccg aggcgtggat cgactacatc tacgaccgag ccaactacgc 1020 caagctggtc gcgttcaccc agttcgtgcc cgcactctcg gacatgaccg acgaactcgc 1080 caaggtcgat cctgcatcgg cggagaaccc gctgatcaac ccgtcggccg aggtgcaggc 1140 gaacctgaag tcgtgggcgg cactgaccga cgagcagacg caggagttca acactgcgta 1200 cgccgccgtc accggcggct gacgcggtgg tagtgccgat gcgaggggca taaatggccc 1260 tgcggacgcg aggagcataa atggccggtg tcgccaccag cagccgtcag cggacaaggt 1320 cgctccgtat ctgatggtcc t 1341 <210> SEQ ID NO 94 <211> LENGTH: 393 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 94 Met Ser Arg Asp Ile Asp Pro His Leu Leu Ala Arg Met Thr Ala Arg 1 5 10 15 Arg Thr Leu Arg Arg Arg Phe Ile Gly Gly Gly Ala Ala Ala Ala Ala 20 25 30 Gly Leu Thr Leu Gly Ser Ser Phe Leu Ala Ala Cys Gly Ser Asp Ser 35 40 45 Gly Thr Ser Ser Thr Thr Ser Gln Asp Ser Gly Pro Ala Ser Gly Ala 50 55 60 Leu Arg Val Ser Asn Trp Pro Leu Tyr Met Ala Asp Gly Phe Ile Ala 65 70 75 80 Ala Phe Gln Thr Ala Ser Gly Ile Thr Val Asp Tyr Lys Glu Asp Phe 85 90 95 Asn Asp Asn Glu Gln Trp Phe Ala Lys Val Lys Glu Pro Leu Ser Arg 100 105 110 Lys Gln Asp Ile Gly Ala Asp Leu Val Ile Pro Thr Glu Phe Met Ala 115 120 125 Ala Arg Val Lys Gly Leu Gly Trp Leu Asn Glu Ile Ser Glu Ala Gly 130 135 140 Val Pro Asn Arg Lys Asn Leu Arg Gln Asp Leu Leu Asp Ser Ser Ile 145 150 155 160 Asp Glu Gly Arg Lys Phe Thr Ala Pro Tyr Met Thr Gly Met Val Gly 165 170 175 Leu Ala Tyr Asn Lys Ala Ala Thr Gly Arg Asp Ile Arg Thr Ile Asp 180 185 190 Asp Leu Trp Asp Pro Ala Phe Lys Gly Arg Val Ser Leu Phe Ser Asp 195 200 205 Val Gln Asp Gly Leu Gly Met Ile Met Leu Ser Gln Gly Asn Ser Pro 210 215 220 Glu Asn Pro Thr Thr Glu Ser Ile Gln Gln Ala Val Asp Leu Val Arg 225 230 235 240 Glu Gln Asn Asp Arg Gly Ser Asp Pro Ser Leu His Arg Gln Arg Leu 245 250 255 Arg Arg Arg Pro Gly Arg Arg Asn Ile Ala Ile Ala Gln Ala Tyr Ser 260 265 270 Gly Asp Val Val Gln Leu Gln Ala Asp Asn Pro Asp Leu Gln Phe Ile 275 280 285 Val Pro Glu Ser Gly Gly Asp Trp Phe Val Asp Thr Met Val Ile Pro 290 295 300 Tyr Thr Thr Gln Asn Gln Lys Ala Ala Glu Ala Trp Ile Asp Tyr Ile 305 310 315 320 Tyr Asp Arg Ala Asn Tyr Ala Lys Leu Val Ala Phe Thr Gln Phe Val 325 330 335 Pro Ala Leu Ser Asp Met Thr Asp Glu Leu Ala Lys Val Asp Pro Ala 340 345 350 Ser Ala Glu Asn Pro Leu Ile Asn Pro Ser Ala Glu Val Gln Ala Asn 355 360 365 Leu Lys Ser Trp Ala Ala Leu Thr Asp Glu Gln Thr Gln Glu Phe Asn 370 375 380 Thr Ala Tyr Ala Ala Val Thr Gly Gly 385 390 <210> SEQ ID NO 95 <211> LENGTH: 22 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 95 atgtcccgtg acatcgatcc cc 22 <210> SEQ ID NO 96 <211> LENGTH: 21 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 96 atcggcacta ccaccgcgtc a 21 <210> SEQ ID NO 97 <211> LENGTH: 861 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 97 gccggcgctc gcatatctcg cgatcttctt ccgtggtgcc gttcttctcg ctggcacgca 60 cctcgttgtc ggagaccggc ggctcggtgt tcatgccgac gctgacgttc gcctgggact 120 tcggcaacta cgtcgacgcg ttcacgatgt accacgagca gatcttccgc tcgttcggct 180 acgcgttcgt cgccacggtg ctgtgcctgt tgctggcgtt cccgctggcc tacgtcatcg 240 cgttcaaggc cggccggttc aagaacctga tcctggggct ggtgatcctg ccgttcttcg 300 tcacgttcct gatccgcacc attgcgtgga agacgatcct ggccgacgaa ggctgggtgg 360 tcaccgcgct gggcgccatc gggctgctgc ctgacgaggg ccggctgctg tccaccagct 420 gggcggtcat cggcggtctg acctacaact ggatcatctt catgatcctg ccgctgtacg 480 tcagcctgga gaagatcgac ccgcgtctgc tggaggcctc ccaggacctc tactcgtcgg 540 cgccgcgcag cttcggcaag gtgatcctgc cgatggcgat gcccggggtg ctggccggga 600 gcatgctggt gttcatcccg gccgtcggcg acttcatcaa cgccgactat ctcggcagta 660 cccagaccac catgatcggc aacgtgatcc agaagcagtt cctggtcgtc aaggactatc 720 cggcggcggc cgcgctgagt ctggggctga tgttgctgat cctgatcggc gtgctcctct 780 acacacgggc gctgggttcg gaggatctgg tatgaccacc caggcaggcg ccgcactggc 840 caccgccgcc cagcaggatc c 861 <210> SEQ ID NO 98 <211> LENGTH: 259 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 98 Val Val Pro Phe Phe Ser Leu Ala Arg Thr Ser Leu Ser Glu Thr Gly 1 5 10 15 Gly Ser Val Phe Met Pro Thr Leu Thr Phe Ala Trp Asp Phe Gly Asn 20 25 30 Tyr Val Asp Ala Phe Thr Met Tyr His Glu Gln Ile Phe Arg Ser Phe 35 40 45 Gly Tyr Ala Phe Val Ala Thr Val Leu Cys Leu Leu Leu Ala Phe Pro 50 55 60 Leu Ala Tyr Val Ile Ala Phe Lys Ala Gly Arg Phe Lys Asn Leu Ile 65 70 75 80 Leu Gly Leu Val Ile Leu Pro Phe Phe Val Thr Phe Leu Ile Arg Thr 85 90 95 Ile Ala Trp Thr Ile Leu Ala Asp Glu Gly Trp Val Val Thr Ala Leu 100 105 110 Gly Ala Ile Gly Leu Leu Pro Asp Glu Gly Arg Leu Leu Ser Thr Ser 115 120 125 Trp Ala Val Ile Gly Gly Leu Thr Tyr Asn Trp Ile Ile Phe Met Ile 130 135 140 Leu Pro Leu Tyr Val Ser Leu Glu Lys Ile Asp Pro Arg Leu Leu Glu 145 150 155 160 Ala Ser Gln Asp Leu Tyr Ser Ser Ala Pro Arg Ser Phe Gly Lys Val 165 170 175 Ile Leu Pro Met Ala Met Pro Gly Val Leu Ala Gly Ser Met Leu Val 180 185 190 Phe Ile Pro Ala Val Gly Asp Phe Ile Asn Ala Asp Tyr Leu Gly Ser 195 200 205 Thr Gln Thr Thr Met Ile Gly Asn Val Ile Gln Lys Gln Phe Leu Val 210 215 220 Val Lys Asp Tyr Pro Ala Ala Ala Ala Leu Ser Leu Gly Leu Met Leu 225 230 235 240 Leu Ile Leu Ile Gly Val Leu Leu Tyr Thr Arg Ala Leu Gly Ser Glu 245 250 255 Asp Leu Val <210> SEQ ID NO 99 <211> LENGTH: 277 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 99 gtaatctttg ctggagcccg tacgccggta ggcaaactca tgggttcgct caaggacttc 60 aagggcagcg atctcggtgc cgtggcgatc aagggcgccc tggagaaagc cttccccggc 120 gtcgacgacc ctgctcgtct cgtcgagtac gtgatcatgg gccaagtgct ctccgccggc 180 gccggccaga tgcccgcccg ccaggccgcc gtcgccgccg gcatcccgtg ggacgtcgcc 240 tcgctgacga tcaacaagat gtgcctgtcg ggcatcg 277 <210> SEQ ID NO 100 <211> LENGTH: 92 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 100 Val Ile Phe Ala Gly Ala Arg Thr Pro Val Gly Lys Leu Met Gly Ser 1 5 10 15 Leu Lys Asp Phe Lys Gly Ser Asp Leu Gly Ala Val Ala Ile Lys Gly 20 25 30 Ala Leu Glu Lys Ala Phe Pro Gly Val Asp Asp Pro Ala Arg Leu Val 35 40 45 Glu Tyr Val Ile Met Gly Gln Val Leu Ser Ala Gly Ala Gly Gln Met 50 55 60 Pro Ala Arg Gln Ala Ala Val Ala Ala Gly Ile Pro Trp Asp Val Ala 65 70 75 80 Ser Leu Thr Ile Asn Lys Met Cys Leu Ser Gly Ile 85 90 <210> SEQ ID NO 101 <211> LENGTH: 12 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <223> OTHER INFORMATION: Residue can be either Glu or Pro <221> NAME/KEY: UNSURE <222> LOCATION: (2)...(2) <223> OTHER INFORMATION: Residue can be either Pro or Glu <221> NAME/KEY: UNSURE <222> LOCATION: (7)...(7) <221> NAME/KEY: UNSURE <222> LOCATION: (12)...(12) <400> SEQUENCE: 101 Xaa Xaa Ala Asp Arg Gly Xaa Ser Lys Tyr Arg Xaa 1 5 10 <210> SEQ ID NO 102 <211> LENGTH: 24 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <400> SEQUENCE: 102 Xaa Ile Asp Glu Ser Leu Phe Asp Ala Glu Glu Lys Met Glu Lys Ala 1 5 10 15 Val Ser Val Ala Arg Asp Ser Ala 20 <210> SEQ ID NO 103 <211> LENGTH: 23 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(2) <221> NAME/KEY: UNSURE <222> LOCATION: (15)...(15) <221> NAME/KEY: UNSURE <222> LOCATION: (17)...(17) <400> SEQUENCE: 103 Xaa Xaa Ile Ala Pro Ala Thr Ser Gly Thr Leu Ser Glu Phe Xaa Ala 1 5 10 15 Xaa Lys Gly Val Thr Met Glu 20 <210> SEQ ID NO 104 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 104 Pro Asn Val Pro Asp Ala Phe Ala Val Leu Ala Asp Arg Val Gly 1 5 10 15 <210> SEQ ID NO 105 <211> LENGTH: 9 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <400> SEQUENCE: 105 Xaa Ile Arg Val Gly Val Asn Gly Phe 1 5 <210> SEQ ID NO 106 <211> LENGTH: 485 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 106 agcggctggg acatcaacac cgccgccttc gagtggtacg tcgactcggg tctcgcggtg 60 atcatgcccg tcggcgggca gtccagcttc tacagcgact ggtacagccc ggcctgcggt 120 aaggccggct gccagaccta caagtgggag acgttcctga cccaggagct gccggcctac 180 ctcgccgcca acaagggggt cgacccgaac cgcaacgcgg ccgtcggtct gtccatggcc 240 ggttcggcgg cgctgacgct ggcgatctac cacccgcagc agttccagta cgccgggtcg 300 ctgtcgggct acctgaaccc gtccgagggg tggtggccga tgctgatcaa catctcgatg 360 ggtgacgcgg gcggctacaa ggccaacgac atgtggggtc gcaccgagga cccgagcagc 420 gcctggaagc gcaacgaccc gatggtcaac atcggcaagc tggtcgccaa caacaccccc 480 ctctc 485 <210> SEQ ID NO 107 <211> LENGTH: 501 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (441)...(441) <221> NAME/KEY: unsure <222> LOCATION: (450)...(450) <400> SEQUENCE: 107 atgccggtgc gacgtgcgcg cagtgcgctt gcgtccgtga ccttcgtcgc ggccgcgtgc 60 gtgggcgctg agggcaccgc actggcggcg acgccggact ggagcgggcg ctacacggtg 120 gtgacgttcg cctccgacaa actcggcacg agtgtggccg cccgccagcc agaacccgac 180 ttcagcggtc agtacacctt cagcacgtcc tgtgtgggca cctgcgtggc caccgcgtcc 240 gacggcccgg cgccgtcgaa cccgacgatt ccgcagcccg cgcgctacac ctgggacggc 300 aggcagtggg tgttcaacta caactggcag tgggagtgct tccgcggcgc cgacgtcccg 360 cgcgagtacg ccgccgcgcg ttcgctggtg ttctacgccc cgaccgccga cgggtcgatg 420 ttcggcacct ggcgcaccga natcctggan ggcctctgca agggcaccgt gatcatgccg 480 gtcgcggcct atccggcgta g 501 <210> SEQ ID NO 108 <211> LENGTH: 180 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 108 atgaaccagc cgcggcccga ggccgaggcg aacctgcggg gctacttcac cgccaacccg 60 gcggagtact acgacctgcg gggcatcctc gccccgatcg gtgacgcgca gcgcaactgc 120 aacatcaccg tgctgccggt agagctgcag acggcctacg acacgttcat ggccggctga 180 <210> SEQ ID NO 109 <211> LENGTH: 166 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 109 Met Pro Val Arg Arg Ala Arg Ser Ala Leu Ala Ser Val Thr Phe Val 1 5 10 15 Ala Ala Ala Cys Val Gly Ala Glu Gly Thr Ala Leu Ala Ala Thr Pro 20 25 30 Asp Trp Ser Gly Arg Tyr Thr Val Val Thr Phe Ala Ser Asp Lys Leu 35 40 45 Gly Thr Ser Val Ala Ala Arg Gln Pro Glu Pro Asp Phe Ser Gly Gln 50 55 60 Tyr Thr Phe Ser Thr Ser Cys Val Gly Thr Cys Val Ala Thr Ala Ser 65 70 75 80 Asp Gly Pro Ala Pro Ser Asn Pro Thr Ile Pro Gln Pro Ala Arg Tyr 85 90 95 Thr Trp Asp Gly Arg Gln Trp Val Phe Asn Tyr Asn Trp Gln Trp Glu 100 105 110 Cys Phe Arg Gly Ala Asp Val Pro Arg Glu Tyr Ala Ala Ala Arg Ser 115 120 125 Leu Val Phe Tyr Ala Pro Thr Ala Asp Gly Ser Met Phe Gly Thr Trp 130 135 140 Arg Thr Asp Ile Leu Asp Gly Leu Cys Lys Gly Thr Val Ile Met Pro 145 150 155 160 Val Ala Ala Tyr Pro Ala 165 <210> SEQ ID NO 110 <211> LENGTH: 74 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 110 Pro Arg Asp Thr His Pro Gly Ala Asn Gln Ala Val Thr Ala Ala Met 1 5 10 15 Asn Gln Pro Arg Pro Glu Ala Glu Ala Asn Leu Arg Gly Tyr Phe Thr 20 25 30 Ala Asn Pro Ala Glu Tyr Tyr Asp Leu Arg Gly Ile Leu Ala Pro Ile 35 40 45 Gly Asp Ala Gln Arg Asn Cys Asn Ile Thr Val Leu Pro Val Glu Leu 50 55 60 Gln Thr Ala Tyr Asp Thr Phe Met Ala Gly 65 70 <210> SEQ ID NO 111 <211> LENGTH: 503 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (358)...(358) <400> SEQUENCE: 111 atgcaggtgc ggcgtgttct gggcagtgtc ggtgcagcag tcgcggtttc ggccgcgtta 60 tggcagacgg gggtttcgat accgaccgcc tcagcggatc cgtgtccgga catcgaggtg 120 atcttcgcgc gcgggaccgg tgcggaaccc ggcctcgggt gggtcggtga tgcgttcgtc 180 aacgcgctgc ggcccaaggt cggtgagcag tcggtgggca cctacgcggt gaactacccg 240 gcaggattcg gacttcgaca aatcggcgcc catgggcgcg gccgacgcat cggggcgggt 300 gcagtggatg gccgacaact gcccggacac caagcttgtc ctgggcggca tgtcgcangg 360 cgccggcgtc atcgacctga tcaccgtcga tccgcgaccg ctgggccggt tcacccccac 420 cccgatgccg ccccgcgtcg ccgaccacgt ggccgccgtt gtggtcttcg gaaatccgtt 480 gcgcgacatc cgtggtggcg gtc 503 <210> SEQ ID NO 112 <211> LENGTH: 167 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (119)...(119) <400> SEQUENCE: 112 Met Gln Val Arg Arg Val Leu Gly Ser Val Gly Ala Ala Val Ala Val 1 5 10 15 Ser Ala Ala Leu Trp Gln Thr Gly Val Ser Ile Pro Thr Ala Ser Ala 20 25 30 Asp Pro Cys Pro Asp Ile Glu Val Ile Phe Ala Arg Gly Thr Gly Ala 35 40 45 Glu Pro Gly Leu Gly Trp Val Gly Asp Ala Phe Val Asn Ala Leu Arg 50 55 60 Pro Lys Val Gly Glu Gln Ser Val Gly Thr Tyr Ala Val Asn Tyr Pro 65 70 75 80 Ala Gly Phe Asp Phe Asp Lys Ser Ala Pro Met Gly Ala Ala Asp Ala 85 90 95 Ser Gly Arg Val Gln Trp Met Ala Asp Asn Cys Pro Asp Thr Lys Leu 100 105 110 Val Leu Gly Gly Met Ser Xaa Gly Ala Gly Val Ile Asp Leu Ile Thr 115 120 125 Val Asp Pro Arg Pro Leu Gly Arg Phe Thr Pro Thr Pro Met Pro Pro 130 135 140 Arg Val Ala Asp His Val Ala Ala Val Val Val Phe Gly Asn Pro Leu 145 150 155 160 Arg Asp Ile Arg Gly Gly Gly 165 <210> SEQ ID NO 113 <211> LENGTH: 1569 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 113 atggccaaga caattgcgta tgacgaagag gcccgccgtg gcctcgagcg gggcctcaac 60 gccctcgcag acgccgtaaa ggtgacgttg ggcccgaagg gtcgcaacgt cgtgctggag 120 aagaagtggg gcgcccccac gatcaccaac gatggtgtgt ccatcgccaa ggagatcgag 180 ctggaggacc cgtacgagaa gatcggcgct gagctggtca aagaggtcgc caagaagacc 240 gacgacgtcg cgggcgacgg caccaccacc gccaccgtgc tcgctcaggc tctggttcgc 300 gaaggcctgc gcaacgtcgc agccggcgcc aacccgctcg gcctcaagcg tggcatcgag 360 aaggctgtcg aggctgtcac ccagtcgctg ctgaagtcgg ccaaggaggt cgagaccaag 420 gagcagattt ctgccaccgc ggcgatttcc gccggcgaca cccagatcgg cgagctcatc 480 gccgaggcca tggacaaggt cggcaacgag ggtgtcatca ccgtcgagga gtcgaacacc 540 ttcggcctgc agctcgagct caccgagggt atgcgcttcg acaagggcta catctcgggt 600 tacttcgtga ccgacgccga gcgccaggaa gccgtcctgg aggatcccta catcctgctg 660 gtcagctcca aggtgtcgac cgtcaaggat ctgctcccgc tgctggagaa ggtcatccag 720 gccggcaagc cgctgctgat catcgccgag gacgtcgagg gcgaggccct gtccacgctg 780 gtggtcaaca agatccgcgg caccttcaag tccgtcgccg tcaaggctcc gggcttcggt 840 gaccgccgca aggcgatgct gcaggacatg gccatcctca ccggtggtca ggtcgtcagc 900 gaaagagtcg ggctgtccct ggagaccgcc gacgtctcgc tgctgggcca ggcccgcaag 960 gtcgtcgtca ccaaggacga gaccaccatc gtcgagggct cgggcgattc cgatgccatc 1020 gccggccggg tggctcagat ccgcgccgag atcgagaaca gcgactccga ctacgaccgc 1080 gagaagctgc aggagcgcct ggccaagctg gccggcggtg ttgcggtgat caaggccgga 1140 gctgccaccg aggtggagct caaggagcgc aagcaccgca tcgaggacgc cgtccgcaac 1200 gcgaaggctg ccgtcgaaga gggcatcgtc gccggtggcg gcgtggctct gctgcagtcg 1260 gctcctgcgc tggacgacct cggcctgacg ggcgacgagg ccaccggtgc caacatcgtc 1320 cgcgtggcgc tgtcggctcc gctcaagcag atcgccttca acggcggcct ggagcccggc 1380 gtcgttgccg agaaggtgtc caacctgccc gcgggtcacg gcctcaacgc cgcgaccggt 1440 gagtacgagg acctgctcaa ggccggcgtc gccgacccgg tgaaggtcac ccgctcggcg 1500 ctgcagaacg cggcgtccat cgcggctctg ttcctcacca ccgaggccgt cgtcgccgac 1560 aagccggag 1569 <210> SEQ ID NO 114 <211> LENGTH: 523 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 114 Met Ala Lys Thr Ile Ala Tyr Asp Glu Glu Ala Arg Arg Gly Leu Glu 1 5 10 15 Arg Gly Leu Asn Ala Leu Ala Asp Ala Val Lys Val Thr Leu Gly Pro 20 25 30 Lys Gly Arg Asn Val Val Leu Glu Lys Lys Trp Gly Ala Pro Thr Ile 35 40 45 Thr Asn Asp Gly Val Ser Ile Ala Lys Glu Ile Glu Leu Glu Asp Pro 50 55 60 Tyr Glu Lys Ile Gly Ala Glu Leu Val Lys Glu Val Ala Lys Lys Thr 65 70 75 80 Asp Asp Val Ala Gly Asp Gly Thr Thr Thr Ala Thr Val Leu Ala Gln 85 90 95 Ala Leu Val Arg Glu Gly Leu Arg Asn Val Ala Ala Gly Ala Asn Pro 100 105 110 Leu Gly Leu Lys Arg Gly Ile Glu Lys Ala Val Glu Ala Val Thr Gln 115 120 125 Ser Leu Leu Lys Ser Ala Lys Glu Val Glu Thr Lys Glu Gln Ile Ser 130 135 140 Ala Thr Ala Ala Ile Ser Ala Gly Asp Thr Gln Ile Gly Glu Leu Ile 145 150 155 160 Ala Glu Ala Met Asp Lys Val Gly Asn Glu Gly Val Ile Thr Val Glu 165 170 175 Glu Ser Asn Thr Phe Gly Leu Gln Leu Glu Leu Thr Glu Gly Met Arg 180 185 190 Phe Asp Lys Gly Tyr Ile Ser Gly Tyr Phe Val Thr Asp Ala Glu Arg 195 200 205 Gln Glu Ala Val Leu Glu Asp Pro Tyr Ile Leu Leu Val Ser Ser Lys 210 215 220 Val Ser Thr Val Lys Asp Leu Leu Pro Leu Leu Glu Lys Val Ile Gln 225 230 235 240 Ala Gly Lys Pro Leu Leu Ile Ile Ala Glu Asp Val Glu Gly Glu Ala 245 250 255 Leu Ser Thr Leu Val Val Asn Lys Ile Arg Gly Thr Phe Lys Ser Val 260 265 270 Ala Val Lys Ala Pro Gly Phe Gly Asp Arg Arg Lys Ala Met Leu Gln 275 280 285 Asp Met Ala Ile Leu Thr Gly Gly Gln Val Val Ser Glu Arg Val Gly 290 295 300 Leu Ser Leu Glu Thr Ala Asp Val Ser Leu Leu Gly Gln Ala Arg Lys 305 310 315 320 Val Val Val Thr Lys Asp Glu Thr Thr Ile Val Glu Gly Ser Gly Asp 325 330 335 Ser Asp Ala Ile Ala Gly Arg Val Ala Gln Ile Arg Ala Glu Ile Glu 340 345 350 Asn Ser Asp Ser Asp Tyr Asp Arg Glu Lys Leu Gln Glu Arg Leu Ala 355 360 365 Lys Leu Ala Gly Gly Val Ala Val Ile Lys Ala Gly Ala Ala Thr Glu 370 375 380 Val Glu Leu Lys Glu Arg Lys His Arg Ile Glu Asp Ala Val Arg Asn 385 390 395 400 Ala Lys Ala Ala Val Glu Glu Gly Ile Val Ala Gly Gly Gly Val Ala 405 410 415 Leu Leu Gln Ser Ala Pro Ala Leu Asp Asp Leu Gly Leu Thr Gly Asp 420 425 430 Glu Ala Thr Gly Ala Asn Ile Val Arg Val Ala Leu Ser Ala Pro Leu 435 440 445 Lys Gln Ile Ala Phe Asn Gly Gly Leu Glu Pro Gly Val Val Ala Glu 450 455 460 Lys Val Ser Asn Leu Pro Ala Gly His Gly Leu Asn Ala Ala Thr Gly 465 470 475 480 Glu Tyr Glu Asp Leu Leu Lys Ala Gly Val Ala Asp Pro Val Lys Val 485 490 495 Thr Arg Ser Ala Leu Gln Asn Ala Ala Ser Ile Ala Ala Leu Phe Leu 500 505 510 Thr Thr Glu Ala Val Val Ala Asp Lys Pro Glu 515 520 <210> SEQ ID NO 115 <211> LENGTH: 647 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 115 atggccaaga caattgcgta tgacgaagag gcccgccgtg gcctcgagcg gggcctcaac 60 gccctcgcag acgccgtaaa ggtgacgttg ggcccgaagg gtcgcaacgt cgtgctggag 120 aagaagtggg gcgcccccac gatcaccaac gatggtgtgt ccatcgccaa ggagatcgag 180 ctggaggacc cgtacgagaa gatcggcgct gagctggtca aagaggtcgc caagaagacc 240 gacgacgtcg cgggcgacgg caccaccacc gccaccgtgc tcgctcaggc tctggttcgc 300 gaaggcctgc gcaacgtcgc agccggcgcc aacccgctcg gcctcaagcg tggcatcgag 360 aaggctgtcg aggctgtcac ccagtcgctg ctgaagtcgg ccaaggaggt cgagaccaag 420 gagcagattt ctgccaccgc ggcgatttcc gccggcgaca cccagatcgg cgagctcatc 480 gccgaggcca tggacaaggt cggcaacgag ggtgtcatca ccgtcgagga gtcgaacacc 540 ttcggcctgc agctcgagct caccgagggt atgcgcttcg acaagggcta catctcgggt 600 tacttcgtga ccgacgccga gcgccaggaa gccgtcctgg aggatcc 647 <210> SEQ ID NO 116 <211> LENGTH: 927 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 116 gatccctaca tcctgctggt cagctccaag gtgtcgaccg tcaaggatct gctcccgctg 60 ctggagaagg tcatccaggc cggcaagccg ctgctgatca tcgccgagga cgtcgagggc 120 gaggccctgt ccacgctggt ggtcaacaag atccgcggca ccttcaagtc cgtcgccgtc 180 aaggctccgg gcttcggtga ccgccgcaag gcgatgctgc aggacatggc catcctcacc 240 ggtggtcagg tcgtcagcga aagagtcggg ctgtccctgg agaccgccga cgtctcgctg 300 ctgggccagg cccgcaaggt cgtcgtcacc aaggacgaga ccaccatcgt cgagggctcg 360 ggcgattccg atgccatcgc cggccgggtg gctcagatcc gcgccgagat cgagaacagc 420 gactccgact acgaccgcga gaagctgcag gagcgcctgg ccaagctggc cggcggtgtt 480 gcggtgatca aggccggagc tgccaccgag gtggagctca aggagcgcaa gcaccgcatc 540 gaggacgccg tccgcaacgc gaaggctgcc gtcgaagagg gcatcgtcgc cggtggcggc 600 gtggctctgc tgcagtcggc tcctgcgctg gacgacctcg gcctgacggg cgacgaggcc 660 accggtgcca acatcgtccg cgtggcgctg tcggctccgc tcaagcagat cgccttcaac 720 ggcggcctgg agcccggcgt cgttgccgag aaggtgtcca acctgcccgc gggtcacggc 780 ctcaacgccg cgaccggtga gtacgaggac ctgctcaagg ccggcgtcgc cgacccggtg 840 aaggtcaccc gctcggcgct gcagaacgcg gcgtccatcg cggctctgtt cctcaccacc 900 gaggccgtcg tcgccgacaa gccggag 927 <210> SEQ ID NO 117 <211> LENGTH: 215 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 117 Met Ala Lys Thr Ile Ala Tyr Asp Glu Glu Ala Arg Arg Gly Leu Glu 1 5 10 15 Arg Gly Leu Asn Ala Leu Ala Asp Ala Val Lys Val Thr Leu Gly Pro 20 25 30 Lys Gly Arg Asn Val Val Leu Glu Lys Lys Trp Gly Ala Pro Thr Ile 35 40 45 Thr Asn Asp Gly Val Ser Ile Ala Lys Glu Ile Glu Leu Glu Asp Pro 50 55 60 Tyr Glu Lys Ile Gly Ala Glu Leu Val Lys Glu Val Ala Lys Lys Thr 65 70 75 80 Asp Asp Val Ala Gly Asp Gly Thr Thr Thr Ala Thr Val Leu Ala Gln 85 90 95 Ala Leu Val Arg Glu Gly Leu Arg Asn Val Ala Ala Gly Ala Asn Pro 100 105 110 Leu Gly Leu Lys Arg Gly Ile Glu Lys Ala Val Glu Ala Val Thr Gln 115 120 125 Ser Leu Leu Lys Ser Ala Lys Glu Val Glu Thr Lys Glu Gln Ile Ser 130 135 140 Ala Thr Ala Ala Ile Ser Ala Gly Asp Thr Gln Ile Gly Glu Leu Ile 145 150 155 160 Ala Glu Ala Met Asp Lys Val Gly Asn Glu Gly Val Ile Thr Val Glu 165 170 175 Glu Ser Asn Thr Phe Gly Leu Gln Leu Glu Leu Thr Glu Gly Met Arg 180 185 190 Phe Asp Lys Gly Tyr Ile Ser Gly Tyr Phe Val Thr Asp Ala Glu Arg 195 200 205 Gln Glu Ala Val Leu Glu Asp 210 215 <210> SEQ ID NO 118 <211> LENGTH: 309 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 118 Asp Pro Tyr Ile Leu Leu Val Ser Ser Lys Val Ser Thr Val Lys Asp 1 5 10 15 Leu Leu Pro Leu Leu Glu Lys Val Ile Gln Ala Gly Lys Pro Leu Leu 20 25 30 Ile Ile Ala Glu Asp Val Glu Gly Glu Ala Leu Ser Thr Leu Val Val 35 40 45 Asn Lys Ile Arg Gly Thr Phe Lys Ser Val Ala Val Lys Ala Pro Gly 50 55 60 Phe Gly Asp Arg Arg Lys Ala Met Leu Gln Asp Met Ala Ile Leu Thr 65 70 75 80 Gly Gly Gln Val Val Ser Glu Arg Val Gly Leu Ser Leu Glu Thr Ala 85 90 95 Asp Val Ser Leu Leu Gly Gln Ala Arg Lys Val Val Val Thr Lys Asp 100 105 110 Glu Thr Thr Ile Val Glu Gly Ser Gly Asp Ser Asp Ala Ile Ala Gly 115 120 125 Arg Val Ala Gln Ile Arg Ala Glu Ile Glu Asn Ser Asp Ser Asp Tyr 130 135 140 Asp Arg Glu Lys Leu Gln Glu Arg Leu Ala Lys Leu Ala Gly Gly Val 145 150 155 160 Ala Val Ile Lys Ala Gly Ala Ala Thr Glu Val Glu Leu Lys Glu Arg 165 170 175 Lys His Arg Ile Glu Asp Ala Val Arg Asn Ala Lys Ala Ala Val Glu 180 185 190 Glu Gly Ile Val Ala Gly Gly Gly Val Ala Leu Leu Gln Ser Ala Pro 195 200 205 Ala Leu Asp Asp Leu Gly Leu Thr Gly Asp Glu Ala Thr Gly Ala Asn 210 215 220 Ile Val Arg Val Ala Leu Ser Ala Pro Leu Lys Gln Ile Ala Phe Asn 225 230 235 240 Gly Gly Leu Glu Pro Gly Val Val Ala Glu Lys Val Ser Asn Leu Pro 245 250 255 Ala Gly His Gly Leu Asn Ala Ala Thr Gly Glu Tyr Glu Asp Leu Leu 260 265 270 Lys Ala Gly Val Ala Asp Pro Val Lys Val Thr Arg Ser Ala Leu Gln 275 280 285 Asn Ala Ala Ser Ile Ala Ala Leu Phe Leu Thr Thr Glu Ala Val Val 290 295 300 Ala Asp Lys Pro Glu 305 <210> SEQ ID NO 119 <211> LENGTH: 162 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 119 ctcgtacagg cgacggagat ctccgacgac gccacgtcgg tacggttggt cgccaccctg 60 ttcggcgtcg tgttgttgac gttggtgctg tccgggctca acgccaccct catccagggc 120 gcaccagaag acagctggcg caggcggatt ccgtcgatct tc 162 <210> SEQ ID NO 120 <211> LENGTH: 1366 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (955)...(955) <221> NAME/KEY: unsure <222> LOCATION: (973)...(973) <400> SEQUENCE: 120 gatgagcagc gtgctgaact cgacctggtt ggcctgggcc gtcgcggtcg cggtcgggtt 60 cccggtgctg ctggtcgtgc tgaccgaggt gcacaacgcg ttgcgtcggc gcggcagcgc 120 gctggcccgc ccggtgcaac tcctgcgtac ctacatcctg ccgctgggcg cgttgctgct 180 cctgctggta caggcgatgg agatctccga cgacgccacg tcggtacggt tggtcgccac 240 cctgttcggc gtcgtgttgt tgacgttggt gctgtccggg ctcaacgcca ccctcatcca 300 gggcgcacca gaagacagct ggcgcaggcg gattccgtcg atcttcctcg acgtcgcgcg 360 cttcgcgctg atcgcggtcg gtatcaccgt gatcatggcc tatgtctggg gcgcgaacgt 420 ggggggcctg ttcaccgcac tgggcgtcac ttccatcgtt cttggcctgg ctctgcagaa 480 ttcggtcggt cagatcatct cgggtctgct gctgctgttc gagcaaccgt tccggctcgg 540 cgactggatc accgtcccca ccgcggcggg ccggccgtcc gcccacggcc gcgtggtgga 600 agtcaactgg cgtgcaacac atatcgacac cggcggcaac ctgctggtaa tgcccaacgc 660 cgaactcgcc ggcgcgtcgt tcaccaatta cagccggccc gtgggagagc accggctgac 720 cgtcgtcacc accttcaacg ccgcggacac ccccgatgat gtctgcgaga tgctgtcgtc 780 ggtcgcggcg tcgctgcccg aactgcgcac cgacggacag atcgccacgc tctatctcgg 840 tgcggccgaa tacgagaagt cgatcccgtt gcacacaccc gcggtggacg actcggtcag 900 gagcacgtac ctgcgatggg tctggtacgc cgcgcgccgg caggaacttc gcctnaacgg 960 cgtcgccgac ganttcgaca cgccggaacg gatcgcctcg gccatgcggg ctgtggcgtc 1020 cacactgcgc ttggcagacg acgaacagca ggagatcgcc gacgtggtgc gtctggtccg 1080 ttacggcaac ggggaacgcc tccagcagcc gggtcaggta ccgaccggga tgaggttcat 1140 cgtagacggc agggtgagtc tgtccgtgat cgatcaggac ggcgacgtga tcccggcgcg 1200 ggtgctcgag cgtggcgact tcctggggca gaccacgctg acgcgggaac cggtactggc 1260 gaccgcgcac gcgctggagg aagtcaccgt gctggagatg gcccgtgacg agatcgagcg 1320 cctggtgcac cgaaagccga tcctgctgca cgtgatcggg gccgtg 1366 <210> SEQ ID NO 121 <211> LENGTH: 455 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (318)...(318) <221> NAME/KEY: UNSURE <222> LOCATION: (324)...(324) <400> SEQUENCE: 121 Met Ser Ser Val Leu Asn Ser Thr Trp Leu Ala Trp Ala Val Ala Val 1 5 10 15 Ala Val Gly Phe Pro Val Leu Leu Val Val Leu Thr Glu Val His Asn 20 25 30 Ala Leu Arg Arg Arg Gly Ser Ala Leu Ala Arg Pro Val Gln Leu Leu 35 40 45 Arg Thr Tyr Ile Leu Pro Leu Gly Ala Leu Leu Leu Leu Leu Val Gln 50 55 60 Ala Met Glu Ile Ser Asp Asp Ala Thr Ser Val Arg Leu Val Ala Thr 65 70 75 80 Leu Phe Gly Val Val Leu Leu Thr Leu Val Leu Ser Gly Leu Asn Ala 85 90 95 Thr Leu Ile Gln Gly Ala Pro Glu Asp Ser Trp Arg Arg Arg Ile Pro 100 105 110 Ser Ile Phe Leu Asp Val Ala Arg Phe Ala Leu Ile Ala Val Gly Ile 115 120 125 Thr Val Ile Met Ala Tyr Val Trp Gly Ala Asn Val Gly Gly Leu Phe 130 135 140 Thr Ala Leu Gly Val Thr Ser Ile Val Leu Gly Leu Ala Leu Gln Asn 145 150 155 160 Ser Val Gly Gln Ile Ile Ser Gly Leu Leu Leu Leu Phe Glu Gln Pro 165 170 175 Phe Arg Leu Gly Asp Trp Ile Thr Val Pro Thr Ala Ala Gly Arg Pro 180 185 190 Ser Ala His Gly Arg Val Val Glu Val Asn Trp Arg Ala Thr His Ile 195 200 205 Asp Thr Gly Gly Asn Leu Leu Val Met Pro Asn Ala Glu Leu Ala Gly 210 215 220 Ala Ser Phe Thr Asn Tyr Ser Arg Pro Val Gly Glu His Arg Leu Thr 225 230 235 240 Val Val Thr Thr Phe Asn Ala Ala Asp Thr Pro Asp Asp Val Cys Glu 245 250 255 Met Leu Ser Ser Val Ala Ala Ser Leu Pro Glu Leu Arg Thr Asp Gly 260 265 270 Gln Ile Ala Thr Leu Tyr Leu Gly Ala Ala Glu Tyr Glu Lys Ser Ile 275 280 285 Pro Leu His Thr Pro Ala Val Asp Asp Ser Val Arg Ser Thr Tyr Leu 290 295 300 Arg Trp Val Trp Tyr Ala Ala Arg Arg Gln Glu Leu Arg Xaa Asn Gly 305 310 315 320 Val Ala Asp Xaa Phe Asp Thr Pro Glu Arg Ile Ala Ser Ala Met Arg 325 330 335 Ala Val Ala Ser Thr Leu Arg Leu Ala Asp Asp Glu Gln Gln Glu Ile 340 345 350 Ala Asp Val Val Arg Leu Val Arg Tyr Gly Asn Gly Glu Arg Leu Gln 355 360 365 Gln Pro Gly Gln Val Pro Thr Gly Met Arg Phe Ile Val Asp Gly Arg 370 375 380 Val Ser Leu Ser Val Ile Asp Gln Asp Gly Asp Val Ile Pro Ala Arg 385 390 395 400 Val Leu Glu Arg Gly Asp Phe Leu Gly Gln Thr Thr Leu Thr Arg Glu 405 410 415 Pro Val Leu Ala Thr Ala His Ala Leu Glu Glu Val Thr Val Leu Glu 420 425 430 Met Ala Arg Asp Glu Ile Glu Arg Leu Val His Arg Lys Pro Ile Leu 435 440 445 Leu His Val Ile Gly Ala Val 450 455 <210> SEQ ID NO 122 <211> LENGTH: 898 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 122 atgacaattc tgccctggaa tgcgcgaacg tctgaacacc cgacgcgaaa aagacgcggg 60 cgctaccacc tcctgtcgcg gatgagcatc cagtccaagt tgctgctgat gctgcttctg 120 accagcattc tctcggctgc ggtggtcggt ttcatcggct atcagtccgg acggtcctcg 180 ctgcgcgcat cggtgttcga ccgcctcacc gacatccgcg agtcgcagtc gcgcgggttg 240 gagaatcagt tcgcggacct gaagaactcg atggtgattt actcgcgcgg cagcactgcc 300 acggaggcga tcggcgcgtt cagcgacggt ttccgtcagc tcggcgatgc gacgatcaat 360 accgggcagg cggcgtcatt gcgccgttac tacgaccgga cgttcgccaa caccaccctc 420 gacgacagcg gaaaccgcgt cgacgtccgc gcgctcatcc cgaaatccaa cccccagcgc 480 tatctgcagg cgctctatac cccgccgttt cagaactggg agaaggcgat cgcgttcgac 540 gacgcgcgcg acggcagcgc ctggtcggcc gccaatgcca gattcaacga gttcttccgc 600 gagatcgtgc accgcttcaa cttcgaggat ctgatgctgc tcgacctcga gggcaacgtg 660 gtgtactccg cctacaaggg gccggatctc gggacaaaca tcgtcaacgg cccctatcgc 720 aaccgggaac tgtcggaagc ctacgagaag gcggtcgcgt cgaactcgat cgactatgtc 780 ggtgtcaccg acttcgggtg gtacctgcct gccgaggaac cgaccgcctg gttcctgtcc 840 ccggtcgggt tgaaggaccg agtcgacggt gtgatggcgg tccagttccc cggaattc 898 <210> SEQ ID NO 123 <211> LENGTH: 1259 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 123 cgcaattgat gacggcgcgg ggacagtggc gtgacaccgg gatgggagac accggtgaga 60 ccatcctggt cggaccggac aatctgatgc gctcggactc ccggctgttc cgcgagaacc 120 gggagaagtt cctggccgac gtcgtcgagg ggggaacccc gccggaggtc gccgacgaat 180 cggttgaccg ccgcggcacc acgctggtgc agccggtgac cacccgctcc gtcgaggagg 240 cccaacgcgg caacaccggg acgacgatcg aggacgacta tctcggccac gaggcgttac 300 aggcgtactc accggtggac ctgccgggac tgcactgggt gatcgtggcc aagatcgaca 360 ccgacgaggc gttcgccccg gtggcgcagt tcaccaggac cctggtgctg tcgacggtga 420 tcatcatctt cggcgtgtcg ctggcggcca tgctgctggc gcggttgttc gtccgtccga 480 tccggcggtt gcaggccggc gcccagcaga tcagcggcgg tgactaccgc ctcgctctgc 540 cggtgttgtc tcgtgacgaa ttcggcgatc tgacaacagc tttcaacgac atgagtcgca 600 atctgtcgat caaggacgag ctgctcggcg aggagcgcgc cgagaaccaa cggctgatgc 660 tgtccctgat gcccgaaccg gtgatgcagc gctacctcga cggggaggag acgatcgccc 720 aggaccacaa gaacgtcacg gtgatcttcg ccgacatgat gggcctcgac gagttgtcgc 780 gcatgttgac ctccgaggaa ctgatggtgg tggtcaacga cctgacccgc cagttcgacg 840 ccgccgccga gagtctcggg gtcgaccacg tgcggacgct gcacgacggg tacctggcca 900 gctgcgggtt aggcgtgccg cggctggaca acgtccggcg cacggtcaat ttcgcgatcg 960 aaatggaccg catcatcgac cggcacgccg ccgagtccgg gcacgacctg cggctccgcg 1020 cgggcatcga caccgggtcg gcggccagcg ggctggtggg gcggtccacg ttggcgtacg 1080 acatgtgggg ttcggcggtc gatgtcgcct accaggtgca gcgcggctcc ccccagcccg 1140 gcatctacgt cacctcgcgg gtgcacgagg tcatgcagga aactctcgac ttcgtcgccg 1200 ccggggaggt cgtcggcgag cgcggcgtcg agacggtctg gcggttgcag ggccacccg 1259 <210> SEQ ID NO 124 <211> LENGTH: 299 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 124 Met Thr Ile Leu Pro Trp Asn Ala Arg Thr Ser Glu His Pro Thr Arg 1 5 10 15 Lys Arg Arg Gly Arg Tyr His Leu Leu Ser Arg Met Ser Ile Gln Ser 20 25 30 Lys Leu Leu Leu Met Leu Leu Leu Thr Ser Ile Leu Ser Ala Ala Val 35 40 45 Val Gly Phe Ile Gly Tyr Gln Ser Gly Arg Ser Ser Leu Arg Ala Ser 50 55 60 Val Phe Asp Arg Leu Thr Asp Ile Arg Glu Ser Gln Ser Arg Gly Leu 65 70 75 80 Glu Asn Gln Phe Ala Asp Leu Lys Asn Ser Met Val Ile Tyr Ser Arg 85 90 95 Gly Ser Thr Ala Thr Glu Ala Ile Gly Ala Phe Ser Asp Gly Phe Arg 100 105 110 Gln Leu Gly Asp Ala Thr Ile Asn Thr Gly Gln Ala Ala Ser Leu Arg 115 120 125 Arg Tyr Tyr Asp Arg Thr Phe Ala Asn Thr Thr Leu Asp Asp Ser Gly 130 135 140 Asn Arg Val Asp Val Arg Ala Leu Ile Pro Lys Ser Asn Pro Gln Arg 145 150 155 160 Tyr Leu Gln Ala Leu Tyr Thr Pro Pro Phe Gln Asn Trp Glu Lys Ala 165 170 175 Ile Ala Phe Asp Asp Ala Arg Asp Gly Ser Ala Trp Ser Ala Ala Asn 180 185 190 Ala Arg Phe Asn Glu Phe Phe Arg Glu Ile Val His Arg Phe Asn Phe 195 200 205 Glu Asp Leu Met Leu Leu Asp Leu Glu Gly Asn Val Val Tyr Ser Ala 210 215 220 Tyr Lys Gly Pro Asp Leu Gly Thr Asn Ile Val Asn Gly Pro Tyr Arg 225 230 235 240 Asn Arg Glu Leu Ser Glu Ala Tyr Glu Lys Ala Val Ala Ser Asn Ser 245 250 255 Ile Asp Tyr Val Gly Val Thr Asp Phe Gly Trp Tyr Leu Pro Ala Glu 260 265 270 Glu Pro Thr Ala Trp Phe Leu Ser Pro Val Gly Leu Lys Asp Arg Val 275 280 285 Asp Gly Val Met Ala Val Gln Phe Pro Gly Ile 290 295 <210> SEQ ID NO 125 <211> LENGTH: 419 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 125 Gln Leu Met Thr Ala Arg Gly Gln Trp Arg Asp Thr Gly Met Gly Asp 1 5 10 15 Thr Gly Glu Thr Ile Leu Val Gly Pro Asp Asn Leu Met Arg Ser Asp 20 25 30 Ser Arg Leu Phe Arg Glu Asn Arg Glu Lys Phe Leu Ala Asp Val Val 35 40 45 Glu Gly Gly Thr Pro Pro Glu Val Ala Asp Glu Ser Val Asp Arg Arg 50 55 60 Gly Thr Thr Leu Val Gln Pro Val Thr Thr Arg Ser Val Glu Glu Ala 65 70 75 80 Gln Arg Gly Asn Thr Gly Thr Thr Ile Glu Asp Asp Tyr Leu Gly His 85 90 95 Glu Ala Leu Gln Ala Tyr Ser Pro Val Asp Leu Pro Gly Leu His Trp 100 105 110 Val Ile Val Ala Lys Ile Asp Thr Asp Glu Ala Phe Ala Pro Val Ala 115 120 125 Gln Phe Thr Arg Thr Leu Val Leu Ser Thr Val Ile Ile Ile Phe Gly 130 135 140 Val Ser Leu Ala Ala Met Leu Leu Ala Arg Leu Phe Val Arg Pro Ile 145 150 155 160 Arg Arg Leu Gln Ala Gly Ala Gln Gln Ile Ser Gly Gly Asp Tyr Arg 165 170 175 Leu Ala Leu Pro Val Leu Ser Arg Asp Glu Phe Gly Asp Leu Thr Thr 180 185 190 Ala Phe Asn Asp Met Ser Arg Asn Leu Ser Ile Lys Asp Glu Leu Leu 195 200 205 Gly Glu Glu Arg Ala Glu Asn Gln Arg Leu Met Leu Ser Leu Met Pro 210 215 220 Glu Pro Val Met Gln Arg Tyr Leu Asp Gly Glu Glu Thr Ile Ala Gln 225 230 235 240 Asp His Lys Asn Val Thr Val Ile Phe Ala Asp Met Met Gly Leu Asp 245 250 255 Glu Leu Ser Arg Met Leu Thr Ser Glu Glu Leu Met Val Val Val Asn 260 265 270 Asp Leu Thr Arg Gln Phe Asp Ala Ala Ala Glu Ser Leu Gly Val Asp 275 280 285 His Val Arg Thr Leu His Asp Gly Tyr Leu Ala Ser Cys Gly Leu Gly 290 295 300 Val Pro Arg Leu Asp Asn Val Arg Arg Thr Val Asn Phe Ala Ile Glu 305 310 315 320 Met Asp Arg Ile Ile Asp Arg His Ala Ala Glu Ser Gly His Asp Leu 325 330 335 Arg Leu Arg Ala Gly Ile Asp Thr Gly Ser Ala Ala Ser Gly Leu Val 340 345 350 Gly Arg Ser Thr Leu Ala Tyr Asp Met Trp Gly Ser Ala Val Asp Val 355 360 365 Ala Tyr Gln Val Gln Arg Gly Ser Pro Gln Pro Gly Ile Tyr Val Thr 370 375 380 Ser Arg Val His Glu Val Met Gln Glu Thr Leu Asp Phe Val Ala Ala 385 390 395 400 Gly Glu Val Val Gly Glu Arg Gly Val Glu Thr Val Trp Arg Leu Gln 405 410 415 Gly His Pro <210> SEQ ID NO 126 <211> LENGTH: 27 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 126 ccggatccga tgagcagcgt gctgaac 27 <210> SEQ ID NO 127 <211> LENGTH: 26 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 127 gcggatccca cggccccgat cacgtg 26 <210> SEQ ID NO 128 <211> LENGTH: 33 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 128 ccggatccaa tgacatttct gccctggaat gcg 33 <210> SEQ ID NO 129 <211> LENGTH: 32 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 129 ccggatccat tcggtggccc tgcaaccgcc ag 32 <210> SEQ ID NO 130 <211> LENGTH: 27 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 130 ccggatccgg agcaaccgtt ccggctc 27 <210> SEQ ID NO 131 <211> LENGTH: 27 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 131 ccggatcccg gctatcagtc cggacgg 27 <210> SEQ ID NO 132 <211> LENGTH: 844 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 132 gagcaaccgt tccggctcgg cgactggatc accgtcccca ccgcggcggg ccggccgtcc 60 gcccacggcc gcgtggtgga agtcaactgg cgtgcaacac atatcgacac cggcggcaac 120 ctgctggtaa tgcccaacgc cgaactcgcc ggcgcgtcgt tcaccaatta cagccggccc 180 gtgggagagc accggctgac cgtcgtcacc accttcaacg ccgcggacac ccccgatgat 240 gtctgcgaga tgctgtcgtc ggtcgcggcg tcgctgcccg aactgcgcac cgacggacag 300 atcgccacgc tctatctcgg tgcggccgaa tacgagaagt cgatcccgtt gcacacaccc 360 gcggtggacg actcggtcag gagcacgtac ctgcgatggg tctggtacgc cgcgcgccgg 420 caggaacttc gcctaacggc gtcgccgacg attcgacacg ccggaacgga tcgcctcggc 480 catgcgggct gtggcgtcca cactgcgctt ggcagacgac gaacagcagg agatcgccga 540 cgtggtgcgt ctggtccgtt acggcaacgg ggaacgcctc cagcagccgg gtcaggtacc 600 gaccgggatg aggttcatcg tagacggcag ggtgagtctg tccgtgatcg atcaggacgg 660 cgacgtgatc ccggcgcggg tgctcgagcg tggcgacttc ctggggcaga ccacgctgac 720 gcgggaaccg gtactggcga ccgcgcacgc gctggaggaa gtcaccgtgc tggagatggc 780 ccgtgacgag atcgagcgcc tggtgcaccg aaagccgatc ctgctgcacg tgatcggggc 840 cgtg 844 <210> SEQ ID NO 133 <211> LENGTH: 742 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 133 ggctatcagt ccggacggtc ctcgctgcgc gcatcggtgt tcgaccgcct caccgacatc 60 cgcgagtcgc agtcgcgcgg gttggagaat cagttcgcgg acctgaagaa ctcgatggtg 120 atttactcgc gcggcagcac tgccacggag gcgatcggcg cgttcagcga cggtttccgt 180 cagctcggcg atgcgacgat caataccggg caggcggcgt cattgcgccg ttactacgac 240 cggacgttcg ccaacaccac cctcgacgac agcggaaacc gcgtcgacgt ccgcgcgctc 300 atcccgaaat ccaaccccca gcgctatctg caggcgctct ataccccgcc gtttcagaac 360 tgggagaagg cgatcgcgtt cgacgacgcg cgcgacggca gcgcctggtc ggccgccaat 420 gccagattca acgagttctt ccgcgagatc gtgcaccgct tcaacttcga ggatctgatg 480 ctgctcgacc tcgagggcaa cgtggtgtac tccgcctaca aggggccgga tctcgggaca 540 aacatcgtca acggccccta tcgcaaccgg gaactgtcgg aagcctacga gaaggcggtc 600 gcgtcgaact cgatcgacta tgtcggtgtc accgacttcg ggtggtacct gcctgccgag 660 gaaccgaccg cctggttcct gtccccggtc gggttgaagg accgagtcga cggtgtgatg 720 gcggtccagt tccccggaat tc 742 <210> SEQ ID NO 134 <211> LENGTH: 282 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (145)...(145) <221> NAME/KEY: UNSURE <222> LOCATION: (151)...(151) <400> SEQUENCE: 134 Glu Gln Pro Phe Arg Leu Gly Asp Trp Ile Thr Val Pro Thr Ala Ala 1 5 10 15 Gly Arg Pro Ser Ala His Gly Arg Val Val Glu Val Asn Trp Arg Ala 20 25 30 Thr His Ile Asp Thr Gly Gly Asn Leu Leu Val Met Pro Asn Ala Glu 35 40 45 Leu Ala Gly Ala Ser Phe Thr Asn Tyr Ser Arg Pro Val Gly Glu His 50 55 60 Arg Leu Thr Val Val Thr Thr Phe Asn Ala Ala Asp Thr Pro Asp Asp 65 70 75 80 Val Cys Glu Met Leu Ser Ser Val Ala Ala Ser Leu Pro Glu Leu Arg 85 90 95 Thr Asp Gly Gln Ile Ala Thr Leu Tyr Leu Gly Ala Ala Glu Tyr Glu 100 105 110 Lys Ser Ile Pro Leu His Thr Pro Ala Val Asp Asp Ser Val Arg Ser 115 120 125 Thr Tyr Leu Arg Trp Val Trp Tyr Ala Ala Arg Arg Gln Glu Leu Arg 130 135 140 Xaa Asn Gly Val Ala Asp Xaa Phe Asp Thr Pro Glu Arg Ile Ala Ser 145 150 155 160 Ala Met Arg Ala Val Ala Ser Thr Leu Arg Leu Ala Asp Asp Glu Gln 165 170 175 Gln Glu Ile Ala Asp Val Val Arg Leu Val Arg Tyr Gly Asn Gly Glu 180 185 190 Arg Leu Gln Gln Pro Gly Gln Val Pro Thr Gly Met Arg Phe Ile Val 195 200 205 Asp Gly Arg Val Ser Leu Ser Val Ile Asp Gln Asp Gly Asp Val Ile 210 215 220 Pro Ala Arg Val Leu Glu Arg Gly Asp Phe Leu Gly Gln Thr Thr Leu 225 230 235 240 Thr Arg Glu Pro Val Leu Ala Thr Ala His Ala Leu Glu Glu Val Thr 245 250 255 Val Leu Glu Met Ala Arg Asp Glu Ile Glu Arg Leu Val His Arg Lys 260 265 270 Pro Ile Leu Leu His Val Ile Gly Ala Val 275 280 <210> SEQ ID NO 135 <211> LENGTH: 247 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 135 Gly Tyr Gln Ser Gly Arg Ser Ser Leu Arg Ala Ser Val Phe Asp Arg 1 5 10 15 Leu Thr Asp Ile Arg Glu Ser Gln Ser Arg Gly Leu Glu Asn Gln Phe 20 25 30 Ala Asp Leu Lys Asn Ser Met Val Ile Tyr Ser Arg Gly Ser Thr Ala 35 40 45 Thr Glu Ala Ile Gly Ala Phe Ser Asp Gly Phe Arg Gln Leu Gly Asp 50 55 60 Ala Thr Ile Asn Thr Gly Gln Ala Ala Ser Leu Arg Arg Tyr Tyr Asp 65 70 75 80 Arg Thr Phe Ala Asn Thr Thr Leu Asp Asp Ser Gly Asn Arg Val Asp 85 90 95 Val Arg Ala Leu Ile Pro Lys Ser Asn Pro Gln Arg Tyr Leu Gln Ala 100 105 110 Leu Tyr Thr Pro Pro Phe Gln Asn Trp Glu Lys Ala Ile Ala Phe Asp 115 120 125 Asp Ala Arg Asp Gly Ser Ala Trp Ser Ala Ala Asn Ala Arg Phe Asn 130 135 140 Glu Phe Phe Arg Glu Ile Val His Arg Phe Asn Phe Glu Asp Leu Met 145 150 155 160 Leu Leu Asp Leu Glu Gly Asn Val Val Tyr Ser Ala Tyr Lys Gly Pro 165 170 175 Asp Leu Gly Thr Asn Ile Val Asn Gly Pro Tyr Arg Asn Arg Glu Leu 180 185 190 Ser Glu Ala Tyr Glu Lys Ala Val Ala Ser Asn Ser Ile Asp Tyr Val 195 200 205 Gly Val Thr Asp Phe Gly Trp Tyr Leu Pro Ala Glu Glu Pro Thr Ala 210 215 220 Trp Phe Leu Ser Pro Val Gly Leu Lys Asp Arg Val Asp Gly Val Met 225 230 235 240 Ala Val Gln Phe Pro Gly Ile 245 <210> SEQ ID NO 136 <211> LENGTH: 45 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (18)...(18) <400> SEQUENCE: 136 atgagcgaaa tcgcccgncc ctggcgggtt ctggcatgtg gcatc 45 <210> SEQ ID NO 137 <211> LENGTH: 340 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (273)...(273) <221> NAME/KEY: unsure <222> LOCATION: (286)...(286) <400> SEQUENCE: 137 gccaccggcg gcgccgccgc ggtgcccgcc ggggtgagcg ccccggcggt cgcgccggcc 60 cccgcgatgc ccgcccgccc ggtgtccacg atcgcgccgg cgacctcggg cacgctcagc 120 gagtttttcg ccgccaaggg cgtcacgatg gagccgcagt ccagccgcga cttccgcgcc 180 ctcaacatcg tgctgccgaa gccgcggggc tgggagcaca tcccggaccc gaacgtgccg 240 gacgcgttcg cggtgctggc cgaccgggtc agnggtaaag gtcagnagtc gacaaacgcc 300 cacgtggtgg tcgacaaaca cgtaggcgag ttcgacggca 340 <210> SEQ ID NO 138 <211> LENGTH: 235 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (16)...(16) <400> SEQUENCE: 138 ggtgaccacc agcgtngaac aggtcgttgc cgaagccgcg gaggccaccg acgcgattgt 60 caacggcttc aaggtcagcg ttccgggtcc gggtccggcc gcaccgccac ctgcacccgg 120 tgcccccggt gtcccgcccg cccccggcgc cccggcgctg ccgctggccg tcgcaccacc 180 cccggctccc gctgttcccg ccgtggcgcc cgcgccacag ctgctgggac tgcag 235 <210> SEQ ID NO 139 <211> LENGTH: 15 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 139 Met Ser Glu Ile Ala Arg Pro Trp Arg Val Leu Ala Cys Gly Ile 1 5 10 15 <210> SEQ ID NO 140 <211> LENGTH: 113 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (96)...(96) <400> SEQUENCE: 140 Ala Thr Gly Gly Ala Ala Ala Val Pro Ala Gly Val Ser Ala Pro Ala 1 5 10 15 Val Ala Pro Ala Pro Ala Met Pro Ala Arg Pro Val Ser Thr Ile Ala 20 25 30 Pro Ala Thr Ser Gly Thr Leu Ser Glu Phe Phe Ala Ala Lys Gly Val 35 40 45 Thr Met Glu Pro Gln Ser Ser Arg Asp Phe Arg Ala Leu Asn Ile Val 50 55 60 Leu Pro Lys Pro Arg Gly Trp Glu His Ile Pro Asp Pro Asn Val Pro 65 70 75 80 Asp Ala Phe Ala Val Leu Ala Asp Arg Val Gly Gly Lys Gly Gln Xaa 85 90 95 Ser Thr Asn Ala His Val Val Val Asp Lys His Val Gly Glu Phe Asp 100 105 110 Gly <210> SEQ ID NO 141 <211> LENGTH: 73 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 141 Val Thr Thr Ser Val Glu Gln Val Val Ala Ala Ala Asp Ala Thr Glu 1 5 10 15 Ala Ile Val Asn Gly Phe Lys Val Ser Val Pro Gly Pro Gly Pro Ala 20 25 30 Ala Pro Pro Pro Ala Pro Gly Ala Pro Gly Val Pro Pro Ala Pro Gly 35 40 45 Ala Pro Ala Leu Pro Leu Ala Val Ala Pro Pro Pro Ala Pro Ala Val 50 55 60 Pro Ala Val Ala Pro Ala Pro Gln Leu 65 70 <210> SEQ ID NO 142 <211> LENGTH: 273 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 142 gcgacctacg tgcagggggg tctcggccgc atcgaggccc gggtggccga cagcggatac 60 agcaacgccg cggccaaggg ctacttcccg ctgagcttca ccgtcgccgg catcgaccag 120 aacggtccga tcgtgaccgc caacgtcacc gcggcggccc cgacgggcgc cgtggccacc 180 cagccgctga cgttcatcgc cgggccgagc ccgaccggat ggcagctgtc caagcagtcc 240 gcactggccc tgatgtccgc ggtcatcgcc gca 273 <210> SEQ ID NO 143 <211> LENGTH: 91 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 143 Ala Thr Tyr Val Gln Gly Gly Leu Gly Arg Ile Glu Ala Arg Val Ala 1 5 10 15 Asp Ser Gly Tyr Ser Asn Ala Ala Ala Lys Gly Tyr Phe Pro Leu Ser 20 25 30 Phe Thr Val Ala Gly Ile Asp Gln Asn Gly Pro Ile Val Thr Ala Asn 35 40 45 Val Thr Ala Ala Ala Pro Thr Gly Ala Val Ala Thr Gln Pro Leu Thr 50 55 60 Phe Ile Ala Gly Pro Ser Pro Thr Gly Trp Gln Leu Ser Lys Gln Ser 65 70 75 80 Ala Leu Ala Leu Met Ser Ala Val Ile Ala Ala 85 90 <210> SEQ ID NO 144 <211> LENGTH: 554 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 144 gatgtcacgc ccggagaatg taacgttcga ccggagaacg ccgtcggcac aacgagttac 60 gtttgagcac ttcagatctc ggttaccttg gatttcaggc gggggaagca gtaaccgatc 120 caagattcga aggacccaaa caacatgaaa ttcactggaa tgaccgtgcg cgcaagccgc 180 gcgccctggc cggcgtcggg gcggcatgtc tgttcggcgg cgtggccgcg gcaaccgtgg 240 cggcacagat ggcgggcgcc cagccggccg agtgcaacgc cagctcactc accggcaccg 300 tcagctcggt gaccggtcag gcgcgtcagt acctagacac ccacccgggc gccaaccagg 360 ccgtcaccgc ggcgatgaac cagccgcggc ccgaggccga ggcgaacctg cggggctact 420 tcaccgccaa cccggcggag tactacgacc tgcggggcat cctcgccccg atcggtgacg 480 cgcagcgcaa ctgcaacatc accgtgctgc cggtagagct gcagacggcc tacgacacgt 540 tcatggccgg ctga 554 <210> SEQ ID NO 145 <211> LENGTH: 136 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 145 Met Lys Phe Thr Gly Met Thr Val Arg Ala Ser Arg Arg Ala Leu Ala 1 5 10 15 Gly Val Gly Ala Ala Cys Leu Phe Gly Gly Val Ala Ala Ala Thr Val 20 25 30 Ala Ala Gln Met Ala Gly Ala Gln Pro Ala Glu Cys Asn Ala Ser Ser 35 40 45 Leu Thr Gly Thr Val Ser Ser Val Thr Gly Gln Ala Arg Gln Tyr Leu 50 55 60 Asp Thr His Pro Gly Ala Asn Gln Ala Val Thr Ala Ala Met Asn Gln 65 70 75 80 Pro Arg Pro Glu Ala Glu Ala Asn Leu Arg Gly Tyr Phe Thr Ala Asn 85 90 95 Pro Ala Glu Tyr Tyr Asp Leu Arg Gly Ile Leu Ala Pro Ile Gly Asp 100 105 110 Ala Gln Arg Asn Cys Asn Ile Thr Val Leu Pro Val Glu Leu Gln Thr 115 120 125 Ala Tyr Asp Thr Phe Met Ala Gly 130 135 <210> SEQ ID NO 146 <211> LENGTH: 808 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (15)...(15) <400> SEQUENCE: 146 ccaagtgtga cgcgngtgtg acggtagacg ttccgaccaa tccaacgacg ccgcagctgg 60 gaatcacccg tgtgccaatt cagtgcgggc aacggtgtcc gtccacgaag ggattcagga 120 aatgatgaca actcgccgga agtcagccgc agtggcggga atcgctgcgg tggccatcct 180 cggtgcggcc gcatgttcga gtgaggacgg tgggagcacg gcctcgtcgg ccagcagcac 240 ggcctcctcc gcgatggagt ccgcgaccga cgagatgacc acgtcgtcgg cggccccttc 300 ggccgaccct gcggccaacc tgatcggctc cggctgcgcg gcctacgccg agcaggtccc 360 cgaaggtccc gggtcggtgg ccgggatggc agccgatccg gtgacggtgg cggcgtcgaa 420 caacccgatg ctgcagacgc tgtcccaggc gctgtccggc cagctcaatc cgcaggtcaa 480 tctcgtcgac accctcgacg gcggtgagtt caccgtgttc gcgccgaccg acgacgcgtt 540 cgccaagatc gatccggcca cgctggagac cctcaagacg gactccgaca tgctgaccaa 600 catcctgacc taccacgtcg tgcccggcca ggccgcgccc gatcaggtgg tcggcgagca 660 tgtgacggtg gagggggcgc cggtcacggt gtccgggatg gccgaccagc tcaaggtcaa 720 cgacgcgtcg gtggtgtgcg gtggggtgca gaccgccaac gcgacggtgt atctgatcga 780 caccgtgctg atgccgccgg cagcgtag 808 <210> SEQ ID NO 147 <211> LENGTH: 228 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 147 Met Met Thr Thr Arg Arg Lys Ser Ala Ala Val Ala Gly Ile Ala Ala 1 5 10 15 Val Ala Ile Leu Gly Ala Ala Ala Cys Ser Ser Glu Asp Gly Gly Ser 20 25 30 Thr Ala Ser Ser Ala Ser Ser Thr Ala Ser Ser Ala Met Glu Ser Ala 35 40 45 Thr Asp Glu Met Thr Thr Ser Ser Ala Ala Pro Ser Ala Asp Pro Ala 50 55 60 Ala Asn Leu Ile Gly Ser Gly Cys Ala Ala Tyr Ala Glu Gln Val Pro 65 70 75 80 Glu Gly Pro Gly Ser Val Ala Gly Met Ala Ala Asp Pro Val Thr Val 85 90 95 Ala Ala Ser Asn Asn Pro Met Leu Gln Thr Leu Ser Gln Ala Leu Ser 100 105 110 Gly Gln Leu Asn Pro Gln Val Asn Leu Val Asp Thr Leu Asp Gly Gly 115 120 125 Glu Phe Thr Val Phe Ala Pro Thr Asp Asp Ala Phe Ala Lys Ile Asp 130 135 140 Pro Ala Thr Leu Glu Thr Leu Lys Thr Asp Ser Asp Met Leu Thr Asn 145 150 155 160 Ile Leu Thr Tyr His Val Val Pro Gly Gln Ala Ala Pro Asp Gln Val 165 170 175 Val Gly Glu His Val Thr Val Glu Gly Ala Pro Val Thr Val Ser Gly 180 185 190 Met Ala Asp Gln Leu Lys Val Asn Asp Ala Ser Val Val Cys Gly Gly 195 200 205 Val Gln Thr Ala Asn Ala Thr Val Tyr Leu Ile Asp Thr Val Leu Met 210 215 220 Pro Pro Ala Ala 225 <210> SEQ ID NO 148 <211> LENGTH: 22 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <221> NAME/KEY: unsure <222> LOCATION: (12)...(12) <221> NAME/KEY: unsure <222> LOCATION: (17)...(17) <400> SEQUENCE: 148 gcsccsgtsg gnccggntgy gc 22 <210> SEQ ID NO 149 <211> LENGTH: 21 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <221> NAME/KEY: unsure <222> LOCATION: (10)...(10) <221> NAME/KEY: unsure <222> LOCATION: (13)...(13) <221> NAME/KEY: unsure <222> LOCATION: (16)...(16) <221> NAME/KEY: unsure <222> LOCATION: (20)...(20) <400> SEQUENCE: 149 rtasgcsgcn gtngcnacng g 21 <210> SEQ ID NO 150 <211> LENGTH: 102 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 150 gcccccgtcg gccccggctg tgcggcctac gtgcaacagg tgccggacgg gccgggatcg 60 gtgcagggca tggcgagctc gcccgtagcg accgccgcgt at 102 <210> SEQ ID NO 151 <211> LENGTH: 683 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 151 gcccgccaac taaaaccgcc gatcatccac tgcaggaagg aatctcacga tcatgaacat 60 cagcatgaaa actcttgccg gagcgggttt cgcgatgacc gccgccgtcg gtctgtcgct 120 gggtaccgca ggcagcgccg cagccgcgcc ggtcggaccg gggtgtgcgg cctacgtgca 180 acaggtgccg gacgggccgg gatcggtgca gggcatggcg agctcgccgg tggccaccgc 240 ggcggccgac aacccgctgc tcaccacgct ctcgcaggcg atctcgggtc agctcaaccc 300 gaacgtcaat ctcgtcgaca cgttcaacgg cggccagttc accgtgttcg cgccgaccaa 360 tgacgccttc gccaagatcg atccggccac gctggagacc ctcaagaccg attccgacct 420 gctgaccaag atcctcacct accacgtcgt gcccggccag gccgcgcccg atcaggtggt 480 cggcgagcat gtgacggtgg agggggcgcc ggtcacggtg tccgggatgg ccgaccagct 540 caaggtcaac gacgcgtcgg tggtgtgcgg tggggtgcag accgccaacg cgacggtgta 600 tctgatcgac accgtgctga tgccgccggc agcgtagccg ggcggcacca cagaagaggg 660 tcccccgcac ccggcctccc ccg 683 <210> SEQ ID NO 152 <211> LENGTH: 231 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 152 Asp Thr Val Leu Met Pro Pro Ala Asn Asn Arg Arg Ser Ser Thr Ala 1 5 10 15 Gly Arg Asn Leu Thr Ile Met Asn Ile Ser Met Lys Thr Leu Ala Gly 20 25 30 Ala Gly Phe Ala Met Thr Ala Ala Val Gly Leu Ser Leu Gly Thr Ala 35 40 45 Gly Ser Ala Ala Ala Ala Pro Val Gly Pro Gly Cys Ala Ala Tyr Val 50 55 60 Gln Gln Val Pro Asp Gly Pro Gly Ser Val Gln Gly Met Ala Ser Ser 65 70 75 80 Pro Val Ala Thr Ala Ala Ala Asp Asn Pro Leu Leu Thr Thr Leu Ser 85 90 95 Gln Ala Ile Ser Gly Gln Leu Asn Pro Asn Val Asn Leu Val Asp Thr 100 105 110 Phe Asn Gly Gly Gln Phe Thr Val Phe Ala Pro Thr Asn Asp Ala Phe 115 120 125 Ala Lys Ile Asp Pro Ala Thr Leu Glu Thr Leu Lys Thr Asp Ser Asp 130 135 140 Leu Leu Thr Lys Ile Leu Thr Tyr His Val Val Pro Gly Gln Ala Ala 145 150 155 160 Pro Asp Gln Val Val Gly Glu His Val Thr Val Glu Gly Ala Pro Val 165 170 175 Thr Val Ser Gly Met Ala Asp Gln Leu Lys Val Asn Asp Ala Ser Val 180 185 190 Val Cys Gly Gly Val Gln Thr Ala Asn Ala Thr Val Tyr Leu Ile Asp 195 200 205 Thr Val Leu Met Pro Pro Ala Ala Pro Gly Gly Thr Thr Glu Glu Gly 210 215 220 Pro Pro His Pro Ala Ser Pro 225 230 <210> SEQ ID NO 153 <211> LENGTH: 1125 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (358)...(358) <400> SEQUENCE: 153 atgcaggtgc ggcgtgttct gggcagtgtc ggtgcagcag tcgcggtttc ggccgcgtta 60 tggcagacgg gggtttcgat accgaccgcc tcagcggatc cgtgtccgga catcgaggtg 120 atcttcgcgc gcgggaccgg tgcggaaccc ggcctcgggt gggtcggtga tgcgttcgtc 180 aacgcgctgc ggcccaaggt cggtgagcag tcggtgggca cctacgcggt gaactacccg 240 gcaggattcg gacttcgaca aatcggcgcc catgggcgcg gccgacgcat cggggcgggt 300 gcagtggatg gccgacaact gcccggacac caagcttgtc ctgggcggca tgtcgcangg 360 cgccggcgtc atcgacctga tcaccgtcga tccgcgaccg ctgggccggt tcacccccac 420 cccgatgccg ccccgcgtcg ccgaccacgt ggccgccgtt gtggtcttcg gaaatccgtt 480 gcgcgacatc cgtggtggcg gtccgctgcc gcagatgagc ggcacctacg ggccgaagtc 540 gatcgatctg tgtgcgctcg acgatccgtt ctgctcgccc ggcttcaacc tgccggccca 600 cttcgcctac gccgacaacg gcatggtgga ggaagccgcg aacttcgccc gcctggaacc 660 gggccagagc gtcgagctgc ccgaggcgcc ctacctgcac ctgttcgtcc cgcggggcga 720 ggtaacgctg gaggacgccg gaccgctgcg cgaaggcgac gcagtgcgtt tcaccgcatc 780 gggcggccag cgggtgaccg ccaccgcgcc cgcggagatc ctcgtctggg agatgcatgc 840 gggactcggt gcggcataag cgaataggag tcctgctggc cggcgcagca ctgctcgccg 900 gatgcacatc cgaacctgga cccgggccgt cggcggcacc ggccccgacg agcacaaccg 960 agagcgcacc cggtcccgga ctcgtcccgg tgaccgtcgc ggtcgacgaa cctctggccg 1020 acgcgccgtt cgaccagccc cgggaggccc tggtgccgca gggttggacg ctgtcggtgt 1080 gggcgcggac cgcccggccg cggctggccg cgtgggcccc ggacg 1125 <210> SEQ ID NO 154 <211> LENGTH: 748 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (119)...(119) <400> SEQUENCE: 154 Met Gln Val Arg Arg Val Leu Gly Ser Val Gly Ala Ala Val Ala Val 1 5 10 15 Ser Ala Ala Leu Trp Gln Thr Gly Val Ser Ile Pro Thr Ala Ser Ala 20 25 30 Asp Pro Cys Pro Asp Ile Glu Val Ile Phe Ala Arg Gly Thr Gly Ala 35 40 45 Glu Pro Gly Leu Gly Trp Val Gly Asp Ala Phe Val Asn Ala Leu Arg 50 55 60 Pro Lys Val Gly Glu Gln Ser Val Gly Thr Tyr Ala Val Asn Tyr Pro 65 70 75 80 Ala Gly Phe Asp Phe Asp Lys Ser Ala Pro Met Gly Ala Ala Asp Ala 85 90 95 Ser Gly Arg Val Gln Trp Met Ala Asp Asn Cys Pro Asp Thr Lys Leu 100 105 110 Val Leu Gly Gly Met Ser Xaa Gly Ala Gly Val Ile Asp Leu Ile Thr 115 120 125 Val Asp Pro Arg Pro Leu Gly Arg Phe Thr Pro Thr Pro Met Pro Pro 130 135 140 Arg Val Ala Asp His Val Ala Ala Val Val Val Phe Gly Asn Pro Leu 145 150 155 160 Arg Asp Ile Arg Gly Gly Gly Pro Arg Leu Glu Pro Arg Gly Leu Asn 165 170 175 Met Glu Thr Ser Glu Arg Gly Leu Tyr Thr His Arg Thr Tyr Arg Gly 180 185 190 Leu Tyr Pro Arg Leu Tyr Ser Ser Glu Arg Ile Leu Glu Ala Ser Pro 195 200 205 Leu Glu Cys Tyr Ser Ala Leu Ala Leu Glu Ala Ser Pro Ala Ser Pro 210 215 220 Pro Arg Pro His Glu Cys Tyr Ser Ser Glu Arg Pro Arg Gly Leu Tyr 225 230 235 240 Pro His Glu Ala Ser Asn Leu Glu Pro Arg Ala Leu Ala His Ile Ser 245 250 255 Pro His Glu Ala Leu Ala Thr Tyr Arg Ala Leu Ala Ala Ser Pro Ala 260 265 270 Ser Asn Gly Leu Tyr Met Glu Thr Val Ala Leu Gly Leu Gly Leu Ala 275 280 285 Leu Ala Ala Leu Ala Ala Ser Asn Pro His Glu Ala Leu Ala Ala Arg 290 295 300 Gly Leu Glu Gly Leu Pro Arg Gly Leu Tyr Gly Leu Asn Ser Glu Arg 305 310 315 320 Val Ala Leu Gly Leu Leu Glu Pro Arg Gly Leu Ala Leu Ala Pro Arg 325 330 335 Thr Tyr Arg Leu Glu His Ile Ser Leu Glu Pro His Glu Val Ala Leu 340 345 350 Pro Arg Ala Arg Gly Gly Leu Tyr Gly Leu Val Ala Leu Thr His Arg 355 360 365 Leu Glu Gly Leu Ala Ser Pro Ala Leu Ala Gly Leu Tyr Pro Arg Leu 370 375 380 Glu Ala Arg Gly Gly Leu Gly Leu Tyr Ala Ser Pro Ala Leu Ala Val 385 390 395 400 Ala Leu Ala Arg Gly Pro His Glu Thr His Arg Ala Leu Ala Ser Glu 405 410 415 Arg Gly Leu Tyr Gly Leu Tyr Gly Leu Asn Ala Arg Gly Val Ala Leu 420 425 430 Thr His Arg Ala Leu Ala Thr His Arg Ala Leu Ala Pro Arg Ala Leu 435 440 445 Ala Gly Leu Ile Leu Glu Leu Glu Val Ala Leu Thr Arg Pro Gly Leu 450 455 460 Met Glu Thr His Ile Ser Ala Leu Ala Gly Leu Tyr Leu Glu Gly Leu 465 470 475 480 Tyr Ala Leu Ala Ala Leu Ala Ala Leu Ala Ala Ser Asn Ala Arg Gly 485 490 495 Ser Glu Arg Pro Arg Ala Leu Ala Gly Leu Tyr Ala Arg Gly Ala Arg 500 505 510 Gly Ser Glu Arg Thr His Arg Ala Leu Ala Ala Arg Gly Ala Arg Gly 515 520 525 Met Glu Thr His Ile Ser Ile Leu Glu Ala Arg Gly Thr His Arg Thr 530 535 540 Arg Pro Thr His Arg Ala Arg Gly Ala Leu Ala Val Ala Leu Gly Leu 545 550 555 560 Tyr Gly Leu Tyr Thr His Arg Gly Leu Tyr Pro Arg Ala Ser Pro Gly 565 570 575 Leu His Ile Ser Ala Ser Asn Ala Arg Gly Gly Leu Ala Arg Gly Thr 580 585 590 His Arg Ala Arg Gly Ser Glu Arg Ala Arg Gly Thr His Arg Ala Arg 595 600 605 Gly Pro Arg Gly Leu Tyr Ala Ser Pro Ala Arg Gly Ala Arg Gly Gly 610 615 620 Leu Tyr Ala Arg Gly Ala Arg Gly Thr His Arg Ser Glu Arg Gly Leu 625 630 635 640 Tyr Ala Arg Gly Ala Arg Gly Ala Leu Ala Val Ala Leu Ala Arg Gly 645 650 655 Pro Arg Ala Leu Ala Pro Arg Gly Leu Tyr Gly Leu Tyr Pro Arg Gly 660 665 670 Leu Tyr Ala Leu Ala Ala Leu Ala Gly Leu Tyr Leu Glu Ala Ser Pro 675 680 685 Ala Leu Ala Val Ala Leu Gly Leu Tyr Val Ala Leu Gly Leu Tyr Ala 690 695 700 Leu Ala Ala Ser Pro Ala Arg Gly Pro Arg Ala Leu Ala Ala Leu Ala 705 710 715 720 Ala Leu Ala Gly Leu Tyr Ala Arg Gly Val Ala Leu Gly Leu Tyr Pro 725 730 735 Arg Gly Leu Tyr Ala Arg Gly Pro Arg Gly Leu Tyr 740 745 <210> SEQ ID NO 155 <211> LENGTH: 666 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 155 atgaaggcaa atcattcggg atgctacaaa tccgccggcc cgatatggtc gcatccatcg 60 ccgctttgtt cgcccgcact ggcaccatct catgcaggtc tggacaatga gctgagcctg 120 ggcatccacg gccagggccc ggaacgactg accattcagc agtgggacac cttcctcaac 180 ggcgtcttcc cgttggaccg caaccggttg acccgggagt ggttccactc gggcaaggcg 240 acctacgtcg tggccggtga aggtgccgac gagttcgagg gcacgctgga gctgggctac 300 caggtgggct ttccgtggtc gctgggcgtg ggcatcaact tcagctacac caccccgaac 360 atcacgtacg acggttacgg cctcaacttc gccgacccgc tgctgggctt cggtgattcc 420 atcgtgaccc cgccgctgtt cccgggtgtc tcgatcacgg cggacctggg caacggcccc 480 ggcatccagg aggtcgcgac cttctccgtg gacgtggccg gccccggtgg ttccgtggtg 540 gtgtccaacg cgcacggcac ggtcaccggt gctgccggtg gtgtgctgct gcgtccgttc 600 gcccgcctga tctcgtcgac cggcgacagc gtcaccacct acggcgcacc ctggaacatg 660 aactga 666 <210> SEQ ID NO 156 <211> LENGTH: 221 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 156 Met Lys Ala Asn His Ser Gly Cys Tyr Lys Ser Ala Gly Pro Ile Trp 1 5 10 15 Ser His Pro Ser Pro Leu Cys Ser Pro Ala Leu Ala Pro Ser His Ala 20 25 30 Gly Leu Asp Asn Glu Leu Ser Leu Gly Val His Gly Gln Gly Pro Glu 35 40 45 His Leu Thr Ile Gln Gln Trp Asp Thr Phe Leu Asn Gly Val Phe Pro 50 55 60 Leu Asp Arg Asn Arg Leu Thr Arg Glu Trp Phe His Ser Gly Lys Ala 65 70 75 80 Thr Tyr Val Val Ala Gly Glu Gly Ala Asp Glu Phe Glu Gly Thr Leu 85 90 95 Glu Leu Gly Tyr His Val Gly Phe Pro Trp Ser Leu Gly Val Gly Ile 100 105 110 Asn Phe Ser Tyr Thr Thr Pro Asn Ile Thr Tyr Asp Gly Tyr Gly Leu 115 120 125 Asn Phe Ala Asp Pro Leu Leu Gly Phe Gly Asp Ser Ile Val Thr Pro 130 135 140 Pro Leu Phe Pro Gly Val Ser Ile Thr Ala Asp Leu Gly Asn Gly Pro 145 150 155 160 Gly Ile Gln Glu Val Ala Thr Phe Ser Val Asp Val Ala Gly Pro Gly 165 170 175 Gly Ser Val Val Val Ser Asn Ala His Gly Thr Val Thr Gly Ala Ala 180 185 190 Gly Gly Val Leu Leu Arg Pro Phe Ala Arg Leu Ile Ser Ser Thr Gly 195 200 205 Asp Ser Val Thr Thr Tyr Gly Ala Pro Trp Asn Met Asn 210 215 220 <210> SEQ ID NO 157 <211> LENGTH: 480 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 157 aacggctggg acatcaacac ccctgcgttc gagtggttct acgagtccgg cttgtcgacg 60 atcatgccgg tcggcggaca gtccagcttc tacagcgact ggtaccagcc gtctcggggc 120 aacgggcaga actacaccta caagtgggag acgttcctga cccaggagct gccgacgtgg 180 ctggaggcca accgcggagt gtcgcgcacc ggcaacgcgt tcgtcggcct gtcgatggcg 240 ggcagcgcgg cgctgaccta cgcgatccat cacccgcagc agttcatcta cgcctcgtcg 300 ctgtcaggct tcctgaaccc gtccgagggc tggtggccga tgctgatcgg gctggcgatg 360 aacgacgcag gcggcttcaa cgccgagagc atgtggggcc cgtcctcgga cccggcgtgg 420 aagcgcaacg acccgatggt caacatcaac cagctggtgg ccaacaacac ccggatctgg 480 <210> SEQ ID NO 158 <211> LENGTH: 161 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 158 Asn Gly Trp Asp Ile Asn Thr Pro Ala Phe Glu Trp Phe Tyr Glu Ser 1 5 10 15 Gly Leu Ser Thr Ile Met Pro Val Gly Gly Gln Ser Ser Phe Tyr Ser 20 25 30 Asp Trp Tyr Gln Pro Ser Arg Gly Asn Gly Gln Asn Tyr Thr Tyr Lys 35 40 45 Trp Glu Thr Phe Leu Thr Gln Glu Leu Pro Thr Trp Leu Glu Ala Asn 50 55 60 Arg Gly Val Ser Arg Thr Gly Asn Ala Phe Val Gly Leu Ser Met Ala 65 70 75 80 Gly Ser Ala Ala Leu Thr Tyr Ala Ile His His Pro Gln Gln Phe Ile 85 90 95 Tyr Ala Ser Ser Leu Ser Gly Phe Leu Asn Pro Ser Glu Gly Trp Trp 100 105 110 Pro Met Leu Ile Gly Leu Ala Met Asn Asp Ala Gly Gly Phe Asn Ala 115 120 125 Glu Ser Met Trp Gly Pro Ser Ser Asp Pro Ala Trp Lys Arg Asn Asp 130 135 140 Pro Met Val Asn Ile Asn Gln Leu Val Ala Asn Asn Thr Arg Ile Trp 145 150 155 160 Ile <210> SEQ ID NO 159 <211> LENGTH: 1626 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 159 atggccaaga caattgcgta tgacgaagag gcccgccgtg gcctcgagcg gggcctcaac 60 gccctcgcag acgccgtaaa ggtgacgttg ggcccgaagg gtcgcaacgt cgtgctggag 120 aagaagtggg gcgcccccac gatcaccaac gatggtgtgt ccatcgccaa ggagatcgag 180 ctggaggacc cgtacgagaa gatcggcgct gagctggtca aagaggtcgc caagaagacc 240 gacgacgtcg cgggcgacgg caccaccacc gccaccgtgc tcgctcaggc tctggttcgc 300 gaaggcctgc gcaacgtcgc agccggcgcc aacccgctcg gcctcaagcg tggcatcgag 360 aaggctgtcg aggctgtcac ccagtcgctg ctgaagtcgg ccaaggaggt cgagaccaag 420 gagcagattt ctgccaccgc ggcgatttcc gccggcgaca cccagatcgg cgagctcatc 480 gccgaggcca tggacaaggt cggcaacgag ggtgtcatca ccgtcgagga gtcgaacacc 540 ttcggcctgc agctcgagct caccgagggt atgcgcttcg acaagggcta catctcgggt 600 tacttcgtga ccgacgccga gcgccaggaa gccgtcctgg aggatcccta catcctgctg 660 gtcagctcca aggtgtcgac cgtcaaggat ctgctcccgc tgctggagaa ggtcatccag 720 gccggcaagc cgctgctgat catcgccgag gacgtcgagg gcgaggccct gtccacgctg 780 gtggtcaaca agatccgcgg caccttcaag tccgtcgccg tcaaggctcc gggcttcggt 840 gaccgccgca aggcgatgct gcaggacatg gccatcctca ccggtggtca ggtcgtcagc 900 gaaagagtcg ggctgtccct ggagaccgcc gacgtctcgc tgctgggcca ggcccgcaag 960 gtcgtcgtca ccaaggacga gaccaccatc gtcgagggct cgggcgattc cgatgccatc 1020 gccggccggg tggctcagat ccgcgccgag atcgagaaca gcgactccga ctacgaccgc 1080 gagaagctgc aggagcgcct ggccaagctg gccggcggtg ttgcggtgat caaggccgga 1140 gctgccaccg aggtggagct caaggagcgc aagcaccgca tcgaggacgc cgtccgcaac 1200 gcgaaggctg ccgtcgaaga gggcatcgtc gccggtggcg gcgtggctct gctgcagtcg 1260 gctcctgcgc tggacgacct cggcctgacg ggcgacgagg ccaccggtgc caacatcgtc 1320 cgcgtggcgc tgtcggctcc gctcaagcag atcgccttca acggcggcct ggagcccggc 1380 gtcgttgccg agaaggtgtc caacctgccc gcgggtcacg gcctcaacgc cgcgaccggt 1440 gagtacgagg acctgctcaa ggccggcgtc gccgacccgg tgaaggtcac ccgctcggcg 1500 ctgcagaacg cggcgtccat cgcggctctg ttcctcacca ccgaggccgt cgtcgccgac 1560 aagccggaga aggcgtccgc acccgcgggc gacccgaccg gtggcatggg cggtatggac 1620 ttctaa 1626 <210> SEQ ID NO 160 <211> LENGTH: 541 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 160 Met Ala Lys Thr Ile Ala Tyr Asp Glu Glu Ala Arg Arg Gly Leu Glu 1 5 10 15 Arg Gly Leu Asn Ala Leu Ala Asp Ala Val Lys Val Thr Leu Gly Pro 20 25 30 Lys Gly Arg Asn Val Val Leu Glu Lys Lys Trp Gly Ala Pro Thr Ile 35 40 45 Thr Asn Asp Gly Val Ser Ile Ala Lys Glu Ile Glu Leu Glu Asp Pro 50 55 60 Tyr Glu Lys Ile Gly Ala Glu Leu Val Lys Glu Val Ala Lys Lys Thr 65 70 75 80 Asp Asp Val Ala Gly Asp Gly Thr Thr Thr Ala Thr Val Leu Ala Gln 85 90 95 Ala Leu Val Arg Glu Gly Leu Arg Asn Val Ala Ala Gly Ala Asn Pro 100 105 110 Leu Gly Leu Lys Arg Gly Ile Glu Lys Ala Val Glu Ala Val Thr Gln 115 120 125 Ser Leu Leu Lys Ser Ala Lys Glu Val Glu Thr Lys Glu Gln Ile Ser 130 135 140 Ala Thr Ala Ala Ile Ser Ala Gly Asp Thr Gln Ile Gly Glu Leu Ile 145 150 155 160 Ala Glu Ala Met Asp Lys Val Gly Asn Glu Gly Val Ile Thr Val Glu 165 170 175 Glu Ser Asn Thr Phe Gly Leu Gln Leu Glu Leu Thr Glu Gly Met Arg 180 185 190 Phe Asp Lys Gly Tyr Ile Ser Gly Tyr Phe Val Thr Asp Ala Glu Arg 195 200 205 Gln Glu Ala Val Leu Glu Asp Pro Tyr Ile Leu Leu Val Ser Ser Lys 210 215 220 Val Ser Thr Val Lys Asp Leu Leu Pro Leu Leu Glu Lys Val Ile Gln 225 230 235 240 Ala Gly Lys Pro Leu Leu Ile Ile Ala Glu Asp Val Glu Gly Glu Ala 245 250 255 Leu Ser Thr Leu Val Val Asn Lys Ile Arg Gly Thr Phe Lys Ser Val 260 265 270 Ala Val Lys Ala Pro Gly Phe Gly Asp Arg Arg Lys Ala Met Leu Gln 275 280 285 Asp Met Ala Ile Leu Thr Gly Gly Gln Val Val Ser Glu Arg Val Gly 290 295 300 Leu Ser Leu Glu Thr Ala Asp Val Ser Leu Leu Gly Gln Ala Arg Lys 305 310 315 320 Val Val Val Thr Lys Asp Glu Thr Thr Ile Val Glu Gly Ser Gly Asp 325 330 335 Ser Asp Ala Ile Ala Gly Arg Val Ala Gln Ile Arg Ala Glu Ile Glu 340 345 350 Asn Ser Asp Ser Asp Tyr Asp Arg Glu Lys Leu Gln Glu Arg Leu Ala 355 360 365 Lys Leu Ala Gly Gly Val Ala Val Ile Lys Ala Gly Ala Ala Thr Glu 370 375 380 Val Glu Leu Lys Glu Arg Lys His Arg Ile Glu Asp Ala Val Arg Asn 385 390 395 400 Ala Lys Ala Ala Val Glu Glu Gly Ile Val Ala Gly Gly Gly Val Ala 405 410 415 Leu Leu Gln Ser Ala Pro Ala Leu Asp Asp Leu Gly Leu Thr Gly Asp 420 425 430 Glu Ala Thr Gly Ala Asn Ile Val Arg Val Ala Leu Ser Ala Pro Leu 435 440 445 Lys Gln Ile Ala Phe Asn Gly Gly Leu Glu Pro Gly Val Val Ala Glu 450 455 460 Lys Val Ser Asn Leu Pro Ala Gly His Gly Leu Asn Ala Ala Thr Gly 465 470 475 480 Glu Tyr Glu Asp Leu Leu Lys Ala Gly Val Ala Asp Pro Val Lys Val 485 490 495 Thr Arg Ser Ala Leu Gln Asn Ala Ala Ser Ile Ala Ala Leu Phe Leu 500 505 510 Thr Thr Glu Ala Val Val Ala Asp Lys Pro Glu Lys Ala Ser Ala Pro 515 520 525 Ala Gly Asp Pro Thr Gly Gly Met Gly Gly Met Asp Phe 530 535 540 <210> SEQ ID NO 161 <211> LENGTH: 985 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 161 ggatccctac atcctgctgg tcagctccaa ggtgtcgacc gtcaaggatc tgctcccgct 60 gctggagaag gtcatccagg ccggcaagcc gctgctgatc atcgccgagg acgtcgaggg 120 cgaggccctg tccacgctgg tggtcaacaa gatccgcggc accttcaagt ccgtcgccgt 180 caaggctccg ggcttcggtg accgccgcaa ggcgatgctg caggacatgg ccatcctcac 240 cggtggtcag gtcgtcagcg aaagagtcgg gctgtccctg gagaccgccg acgtctcgct 300 gctgggccag gcccgcaagg tcgtcgtcac caaggacgag accaccatcg tcgagggctc 360 gggcgattcc gatgccatcg ccggccgggt ggctcagatc cgcgccgaga tcgagaacag 420 cgactccgac tacgaccgcg agaagctgca ggagcgcctg gccaagctgg ccggcggtgt 480 tgcggtgatc aaggccggag ctgccaccga ggtggagctc aaggagcgca agcaccgcat 540 cgaggacgcc gtccgcaacg cgaaggctgc cgtcgaagag ggcatcgtcg ccggtggcgg 600 cgtggctctg ctgcagtcgg ctcctgcgct ggacgacctc ggcctgacgg gcgacgaggc 660 caccggtgcc aacatcgtcc gcgtggcgct gtcggctccg ctcaagcaga tcgccttcaa 720 cggcggcctg gagcccggcg tcgttgccga gaaggtgtcc aacctgcccg cgggtcacgg 780 cctcaacgcc gcgaccggtg agtacgagga cctgctcaag gccggcgtcg ccgacccggt 840 gaaggtcacc cgctcggcgc tgcagaacgc ggcgtccatc gcggctctgt tcctcaccac 900 cgaggccgtc gtcgccgaca agccggagaa ggcgtccgca cccgcgggcg acccgaccgg 960 tggcatgggc ggtatggact tctaa 985 <210> SEQ ID NO 162 <211> LENGTH: 327 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 162 Asp Pro Tyr Ile Leu Leu Val Ser Ser Lys Val Ser Thr Val Lys Asp 1 5 10 15 Leu Leu Pro Leu Leu Glu Lys Val Ile Gln Ala Gly Lys Pro Leu Leu 20 25 30 Ile Ile Ala Glu Asp Val Glu Gly Glu Ala Leu Ser Thr Leu Val Val 35 40 45 Asn Lys Ile Arg Gly Thr Phe Lys Ser Val Ala Val Lys Ala Pro Gly 50 55 60 Phe Gly Asp Arg Arg Lys Ala Met Leu Gln Asp Met Ala Ile Leu Thr 65 70 75 80 Gly Gly Gln Val Val Ser Glu Arg Val Gly Leu Ser Leu Glu Thr Ala 85 90 95 Asp Val Ser Leu Leu Gly Gln Ala Arg Lys Val Val Val Thr Lys Asp 100 105 110 Glu Thr Thr Ile Val Glu Gly Ser Gly Asp Ser Asp Ala Ile Ala Gly 115 120 125 Arg Val Ala Gln Ile Arg Ala Glu Ile Glu Asn Ser Asp Ser Asp Tyr 130 135 140 Asp Arg Glu Lys Leu Gln Glu Arg Leu Ala Lys Leu Ala Gly Gly Val 145 150 155 160 Ala Val Ile Lys Ala Gly Ala Ala Thr Glu Val Glu Leu Lys Glu Arg 165 170 175 Lys His Arg Ile Glu Asp Ala Val Arg Asn Ala Lys Ala Ala Val Glu 180 185 190 Glu Gly Ile Val Ala Gly Gly Gly Val Ala Leu Leu Gln Ser Ala Pro 195 200 205 Ala Leu Asp Asp Leu Gly Leu Thr Gly Asp Glu Ala Thr Gly Ala Asn 210 215 220 Ile Val Arg Val Ala Leu Ser Ala Pro Leu Lys Gln Ile Ala Phe Asn 225 230 235 240 Gly Gly Leu Glu Pro Gly Val Val Ala Glu Lys Val Ser Asn Leu Pro 245 250 255 Ala Gly His Gly Leu Asn Ala Ala Thr Gly Glu Tyr Glu Asp Leu Leu 260 265 270 Lys Ala Gly Val Ala Asp Pro Val Lys Val Thr Arg Ser Ala Leu Gln 275 280 285 Asn Ala Ala Ser Ile Ala Ala Leu Phe Leu Thr Thr Glu Ala Val Val 290 295 300 Ala Asp Lys Pro Glu Lys Ala Ser Ala Pro Ala Gly Asp Pro Thr Gly 305 310 315 320 Gly Met Gly Gly Met Asp Phe 325 <210> SEQ ID NO 163 <211> LENGTH: 403 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 163 ggatccgcgg caccggctgg tgacgaccaa gtacaacccg gcccgcacct ggacggccga 60 gaactccgtc ggcatcggcg gcgcgtacct gtgcatctac gggatggagg gccccggcgg 120 ctatcagttc gtcggccgca ccacccaggt gtggagtcgt taccgccaca cggcgccgtt 180 cgaacccgga agtccctggc tgctgcggtt tttcgaccga atttcgtggt atccggtgtc 240 ggccgaggag ctgctggaat tgcgagccga catggccgca ggccggggct cggtcgacat 300 caccgacggc gtgttctccc tcgccgagca cgaacggttc ctggccgaca acgccgacga 360 catcgccgcg ttccgttccc ggcaggcggc cgcgttctcc gcc 403 <210> SEQ ID NO 164 <211> LENGTH: 336 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 164 cggaccgcgt gggcggccgc cggcgagttc gaccgcgccg agaaagccgc gtcgaaggcc 60 accgacgccg ataccgggga cctggtgctc tacgacggtg cgagcgggtc gacgctccgt 120 tcgcgtcgag cgtgtggaag gtcgacgtcg ccgtcggtga ccgggtggtg gccggacagc 180 cgttgctggc gctggaggcg atgaagatgg agaccgtgct gcgcgccccg gccgacgggg 240 tggtcaccca gatcctggtc tccgctgggc atctcgtcga tcccggcacc ccactggtcg 300 tggtcggcac cggagtgcgc gcatgagcgc cgtcga 336 <210> SEQ ID NO 165 <211> LENGTH: 134 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 165 Asp Pro Arg His Arg Leu Val Thr Thr Lys Tyr Asn Pro Ala Arg Thr 1 5 10 15 Trp Thr Ala Glu Asn Ser Val Gly Ile Gly Gly Ala Tyr Leu Cys Ile 20 25 30 Tyr Gly Met Glu Gly Pro Gly Gly Tyr Gln Phe Val Gly Arg Thr Thr 35 40 45 Gln Val Trp Ser Arg Tyr Arg His Thr Ala Pro Phe Glu Pro Gly Ser 50 55 60 Pro Trp Leu Leu Arg Phe Phe Asp Arg Ile Ser Trp Tyr Pro Val Ser 65 70 75 80 Ala Glu Glu Leu Leu Glu Leu Arg Ala Asp Met Ala Ala Gly Arg Gly 85 90 95 Ser Val Asp Ile Thr Asp Gly Val Phe Ser Leu Ala Glu His Glu Arg 100 105 110 Phe Leu Ala Asp Asn Ala Asp Asp Ile Ala Ala Phe Arg Ser Arg Gln 115 120 125 Ala Ala Ala Phe Ser Ala 130 <210> SEQ ID NO 166 <211> LENGTH: 108 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 166 Arg Thr Ala Trp Ala Ala Ala Gly Glu Phe Asp Arg Ala Glu Lys Ala 1 5 10 15 Ala Ser Lys Ala Thr Asp Ala Asp Thr Gly Asp Leu Val Leu Tyr Asp 20 25 30 Gly Asp Glu Arg Val Asp Ala Pro Phe Ala Ser Ser Val Trp Lys Val 35 40 45 Asp Val Ala Val Gly Asp Arg Val Val Ala Gly Gln Pro Leu Leu Ala 50 55 60 Leu Glu Ala Met Lys Met Glu Thr Val Leu Arg Ala Pro Ala Asp Gly 65 70 75 80 Val Val Thr Gln Ile Leu Val Ser Ala Gly His Leu Val Asp Pro Gly 85 90 95 Thr Pro Leu Val Val Val Gly Thr Gly Val Arg Ala 100 105 <210> SEQ ID NO 167 <211> LENGTH: 31 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 167 atagaattcg tccgacagtg ggacctcgag c 31 <210> SEQ ID NO 168 <211> LENGTH: 27 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 168 atagaattcc caccgcgtca gccgccg 27 <210> SEQ ID NO 169 <211> LENGTH: 1111 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 169 gtccgacagt gggacctcga gcaccacgtc acaggacagc ggccccgcca gcggcgccct 60 gcgcgtctcc aactggccgc tctatatggc cgacggtttc atcgcagcgt tccagaccgc 120 ctcgggcatc acggtcgact acaaagaaga cttcaacgac aacgagcagt ggttcgccaa 180 ggtcaaggag ccgttgtcgc gcaagcagga cataggcgcc gacctggtga tccccaccga 240 gttcatggcc gcgcgcgtca agggcctggg atggctcaat gagatcagcg aagccggcgt 300 gcccaatcgc aagaatctgc gtcaggacct gttggactcg agcatcgacg agggccgcaa 360 gttcaccgcg ccgtacatga ccggcatggt cggtctcgcc tacaacaagg cagccaccgg 420 acgcgatatc cgcaccatcg acgacctctg ggatcccgcg ttcaagggcc gcgtcagtct 480 gttctccgac gtccaggacg gcctcggcat gatcatgctc tcgcagggca actcgccgga 540 gaatccgacc accgagtcca ttcagcaggc ggtcgatctg gtccgcgaac agaacgacag 600 ggggtcagat ccgtcgcttc accggcaacg actacgccga cgacctggcc gcagaaacat 660 cgccatcgcg caggcgtact ccggtgacgt cgtgcagctg caggcggaca accccgatct 720 gcagttcatc gttcccgaat ccggcggcga ctggttcgtc gacacgatgg tgatcccgta 780 caccacgcag aaccagaagg ccgccgaggc gtggatcgac tacatctacg accgagccaa 840 ctacgccaag ctggtcgcgt tcacccagtt cgtgcccgca ctctcggaca tgaccgacga 900 actcgccaag gtcgatcctg catcggcgga gaacccgctg atcaacccgt cggccgaggt 960 gcaggcgaac ctgaagtcgt gggcggcact gaccgacgag cagacgcagg agttcaacac 1020 tgcgtacgcc gccgtcaccg gcggctgacg cggtggtagt gccgatgcga ggggcataaa 1080 tggccctgcg gacgcgagga gcataaatgg c 1111 <210> SEQ ID NO 170 <211> LENGTH: 348 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 170 Ser Asp Ser Gly Thr Ser Ser Thr Thr Ser Gln Asp Ser Gly Pro Ala 1 5 10 15 Ser Gly Ala Leu Arg Val Ser Asn Trp Pro Leu Tyr Met Ala Asp Gly 20 25 30 Phe Ile Ala Ala Phe Gln Thr Ala Ser Gly Ile Thr Val Asp Tyr Lys 35 40 45 Glu Asp Phe Asn Asp Asn Glu Gln Trp Phe Ala Lys Val Lys Glu Pro 50 55 60 Leu Ser Arg Lys Gln Asp Ile Gly Ala Asp Leu Val Ile Pro Thr Glu 65 70 75 80 Phe Met Ala Ala Arg Val Lys Gly Leu Gly Trp Leu Asn Glu Ile Ser 85 90 95 Glu Ala Gly Val Pro Asn Arg Lys Asn Leu Arg Gln Asp Leu Leu Asp 100 105 110 Ser Ser Ile Asp Glu Gly Arg Lys Phe Thr Ala Pro Tyr Met Thr Gly 115 120 125 Met Val Gly Leu Ala Tyr Asn Lys Ala Ala Thr Gly Arg Asp Ile Arg 130 135 140 Thr Ile Asp Asp Leu Trp Asp Pro Ala Phe Lys Gly Arg Val Ser Leu 145 150 155 160 Phe Ser Asp Val Gln Asp Gly Leu Gly Met Ile Met Leu Ser Gln Gly 165 170 175 Asn Ser Pro Glu Asn Pro Thr Thr Glu Ser Ile Gln Gln Ala Val Asp 180 185 190 Leu Val Arg Glu Gln Asn Asp Arg Gly Gln Ile Arg Arg Phe Thr Gly 195 200 205 Asn Asp Tyr Ala Asp Asp Leu Ala Ala Gly Asn Ile Ala Ile Ala Gln 210 215 220 Ala Tyr Ser Gly Asp Val Val Gln Leu Gln Ala Asp Asn Pro Asp Leu 225 230 235 240 Gln Phe Ile Val Pro Glu Ser Gly Gly Asp Trp Phe Val Asp Thr Met 245 250 255 Val Ile Pro Tyr Thr Thr Gln Asn Gln Lys Ala Ala Glu Ala Trp Ile 260 265 270 Asp Tyr Ile Tyr Asp Arg Ala Asn Tyr Ala Lys Leu Val Ala Phe Thr 275 280 285 Gln Phe Val Pro Ala Leu Ser Asp Met Thr Asp Glu Leu Ala Lys Val 290 295 300 Asp Pro Ala Ser Ala Glu Asn Pro Leu Ile Asn Pro Ser Ala Glu Val 305 310 315 320 Gln Ala Asn Leu Lys Ser Trp Ala Ala Leu Thr Asp Glu Gln Thr Gln 325 330 335 Glu Phe Asn Thr Ala Tyr Ala Ala Val Thr Gly Gly 340 345 <210> SEQ ID NO 171 <211> LENGTH: 1420 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (955)...(955) <221> NAME/KEY: unsure <222> LOCATION: (973)...(973) <400> SEQUENCE: 171 gatgagcagc gtgctgaact cgacctggtt ggcctgggcc gtcgcggtcg cggtcgggtt 60 cccggtgctg ctggtcgtgc tgaccgaggt gcacaacgcg ttgcgtcggc gcggcagcgc 120 gctggcccgc ccggtgcaac tcctgcgtac ctacatcctg ccgctgggcg cgttgctgct 180 cctgctggta caggcgatgg agatctccga cgacgccacg tcggtacggt tggtcgccac 240 cctgttcggc gtcgtgttgt tgacgttggt gctgtccggg ctcaacgcca ccctcatcca 300 gggcgcacca gaagacagct ggcgcaggcg gattccgtcg atcttcctcg acgtcgcgcg 360 cttcgcgctg atcgcggtcg gtatcaccgt gatcatggcc tatgtctggg gcgcgaacgt 420 ggggggcctg ttcaccgcac tgggcgtcac ttccatcgtt cttggcctgg ctctgcagaa 480 ttcggtcggt cagatcatct cgggtctgct gctgctgttc gagcaaccgt tccggctcgg 540 cgactggatc accgtcccca ccgcggcggg ccggccgtcc gcccacggcc gcgtggtgga 600 agtcaactgg cgtgcaacac atatcgacac cggcggcaac ctgctggtaa tgcccaacgc 660 cgaactcgcc ggcgcgtcgt tcaccaatta cagccggccc gtgggagagc accggctgac 720 cgtcgtcacc accttcaacg ccgcggacac ccccgatgat gtctgcgaga tgctgtcgtc 780 ggtcgcggcg tcgctgcccg aactgcgcac cgacggacag atcgccacgc tctatctcgg 840 tgcggccgaa tacgagaagt cgatcccgtt gcacacaccc gcggtggacg actcggtcag 900 gagcacgtac ctgcgatggg tctggtacgc cgcgcgccgg caggaacttc gcctnaacgg 960 cgtcgccgac ganttcgaca cgccggaacg gatcgcctcg gccatgcggg ctgtggcgtc 1020 cacactgcgc ttggcagacg acgaacagca ggagatcgcc gacgtggtgc gtctggtccg 1080 ttacggcaac ggggaacgcc tccagcagcc gggtcaggta ccgaccggga tgaggttcat 1140 cgtagacggc agggtgagtc tgtccgtgat cgatcaggac ggcgacgtga tcccggcgcg 1200 ggtgctcgag cgtggcgact tcctggggca gaccacgctg acgcgggaac cggtactggc 1260 gaccgcgcac gcgctggagg aagtcaccgt gctggagatg gcccgtgacg agatcgagcg 1320 cctggtgcac cgaaagccga tcctgctgca cgtgatcggg gccgtgatcg ccgaccggcg 1380 cgcgcacgaa cttcggttga tggcggactc gcaggactga 1420 <210> SEQ ID NO 172 <211> LENGTH: 471 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (318)...(318) <221> NAME/KEY: UNSURE <222> LOCATION: (324)...(324) <400> SEQUENCE: 172 Met Ser Ser Val Leu Asn Ser Thr Trp Leu Ala Trp Ala Val Ala Val 1 5 10 15 Ala Val Gly Phe Pro Val Leu Leu Val Val Leu Thr Glu Val His Asn 20 25 30 Ala Leu Arg Arg Arg Gly Ser Ala Leu Ala Arg Pro Val Gln Leu Leu 35 40 45 Arg Thr Tyr Ile Leu Pro Leu Gly Ala Leu Leu Leu Leu Leu Val Gln 50 55 60 Ala Met Glu Ile Ser Asp Asp Ala Thr Ser Val Arg Leu Val Ala Thr 65 70 75 80 Leu Phe Gly Val Val Leu Leu Thr Leu Val Leu Ser Gly Leu Asn Ala 85 90 95 Thr Leu Ile Gln Gly Ala Pro Glu Asp Ser Trp Arg Arg Arg Ile Pro 100 105 110 Ser Ile Phe Leu Asp Val Ala Arg Phe Ala Leu Ile Ala Val Gly Ile 115 120 125 Thr Val Ile Met Ala Tyr Val Trp Gly Ala Asn Val Gly Gly Leu Phe 130 135 140 Thr Ala Leu Gly Val Thr Ser Ile Val Leu Gly Leu Ala Leu Gln Asn 145 150 155 160 Ser Val Gly Gln Ile Ile Ser Gly Leu Leu Leu Leu Phe Glu Gln Pro 165 170 175 Phe Arg Leu Gly Asp Trp Ile Thr Val Pro Thr Ala Ala Gly Arg Pro 180 185 190 Ser Ala His Gly Arg Val Val Glu Val Asn Trp Arg Ala Thr His Ile 195 200 205 Asp Thr Gly Gly Asn Leu Leu Val Met Pro Asn Ala Glu Leu Ala Gly 210 215 220 Ala Ser Phe Thr Asn Tyr Ser Arg Pro Val Gly Glu His Arg Leu Thr 225 230 235 240 Val Val Thr Thr Phe Asn Ala Ala Asp Thr Pro Asp Asp Val Cys Glu 245 250 255 Met Leu Ser Ser Val Ala Ala Ser Leu Pro Glu Leu Arg Thr Asp Gly 260 265 270 Gln Ile Ala Thr Leu Tyr Leu Gly Ala Ala Glu Tyr Glu Lys Ser Ile 275 280 285 Pro Leu His Thr Pro Ala Val Asp Asp Ser Val Arg Ser Thr Tyr Leu 290 295 300 Arg Trp Val Trp Tyr Ala Ala Arg Arg Gln Glu Leu Arg Xaa Asn Gly 305 310 315 320 Val Ala Asp Xaa Phe Asp Thr Pro Glu Arg Ile Ala Ser Ala Met Arg 325 330 335 Ala Val Ala Ser Thr Leu Arg Leu Ala Asp Asp Glu Gln Gln Glu Ile 340 345 350 Ala Asp Val Val Arg Leu Val Arg Tyr Gly Asn Gly Glu Arg Leu Gln 355 360 365 Gln Pro Gly Gln Val Pro Thr Gly Met Arg Phe Ile Val Asp Gly Arg 370 375 380 Val Ser Leu Ser Val Ile Asp Gln Asp Gly Asp Val Ile Pro Ala Arg 385 390 395 400 Val Leu Glu Arg Gly Asp Phe Leu Gly Gln Thr Thr Leu Thr Arg Glu 405 410 415 Pro Val Leu Ala Thr Ala His Ala Leu Glu Glu Val Thr Val Leu Glu 420 425 430 Met Ala Arg Asp Glu Ile Glu Arg Leu Val His Arg Lys Pro Ile Leu 435 440 445 Leu His Val Ile Gly Ala Val Ile Ala Asp Arg Arg Ala His Glu Leu 450 455 460 Arg Leu Met Asp Ser Gln Asp 465 470 <210> SEQ ID NO 173 <211> LENGTH: 2172 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 173 tagatgacaa ttctgccctg gaatgcgcga acgtctgaac acccgacgcg aaaaagacgc 60 gggcgctacc acctcctgtc gcggatgagc atccagtcca agttgctgct gatgctgctt 120 ctgaccagca ttctctcggc tgcggtggtc ggtttcatcg gctatcagtc cggacggtcc 180 tcgctgcgcg catcggtgtt cgaccgcctc accgacatcc gcgagtcgca gtcgcgcggg 240 ttggagaatc agttcgcgga cctgaagaac tcgatggtga tttactcgcg cggcagcact 300 gccacggagg cgatcggcgc gttcagcgac ggtttccgtc agctcggcga tgcgacgatc 360 aataccgggc aggcggcgtc attgcgccgt tactacgacc ggacgttcgc caacaccacc 420 ctcgacgaca gcggaaaccg cgtcgacgtc cgcgcgctca tcccgaaatc caacccccag 480 cgctatctgc aggcgctcta taccccgccg tttcagaact gggagaaggc gatcgcgttc 540 gacgacgcgc gcgacggcag cgcctggtcg gccgccaatg ccagattcaa cgagttcttc 600 cgcgagatcg tgcaccgctt caacttcgag gatctgatgc tgctcgacct cgagggcaac 660 gtggtgtact ccgcctacaa ggggccggat ctcgggacaa acatcgtcaa cggcccctat 720 cgcaaccggg aactgtcgga agcctacgag aaggcggtcg cgtcgaactc gatcgactat 780 gtcggtgtca ccgacttcgg gtggtacctg cctgccgagg aaccgaccgc ctggttcctg 840 tccccggtcg ggttgaagga ccgagtcgac ggtgtgatgg cggtccagtt cccgatcgcg 900 cggatcaacg aattgatgac ggcgcgggga cagtggcgtg acaccgggat gggagacacc 960 ggtgagacca tcctggtcgg accggacaat ctgatgcgct cggactcccg gctgttccgc 1020 gagaaccggg agaagttcct ggccgacgtc gtcgaggggg gaaccccgcc ggaggtcgcc 1080 gacgaatcgg ttgaccgccg cggcaccacg ctggtgcagc cggtgaccac ccgctccgtc 1140 gaggaggccc aacgcggcaa caccgggacg acgatcgagg acgactatct cggccacgag 1200 gcgttacagg cgtactcacc ggtggacctg ccgggactgc actgggtgat cgtggccaag 1260 atcgacaccg acgaggcgtt cgccccggtg gcgcagttca ccaggaccct ggtgctgtcg 1320 acggtgatca tcatcttcgg cgtgtcgctg gcggccatgc tgctggcgcg gttgttcgtc 1380 cgtccgatcc ggcggttgca ggccggcgcc cagcagatca gcggcggtga ctaccgcctc 1440 gctctgccgg tgttgtctcg tgacgaattc ggcgatctga caacagcttt caacgacatg 1500 agtcgcaatc tgtcgatcaa ggacgagctg ctcggcgagg agcgcgccga gaaccaacgg 1560 ctgatgctgt ccctgatgcc cgaaccggtg atgcagcgct acctcgacgg ggaggagacg 1620 atcgcccagg accacaagaa cgtcacggtg atcttcgccg acatgatggg cctcgacgag 1680 ttgtcgcgca tgttgacctc cgaggaactg atggtggtgg tcaacgacct gacccgccag 1740 ttcgacgccg ccgccgagag tctcggggtc gaccacgtgc ggacgctgca cgacgggtac 1800 ctggccagct gcgggttagg cgtgccgcgg ctggacaacg tccggcgcac ggtcaatttc 1860 gcgatcgaaa tggaccgcat catcgaccgg cacgccgccg agtccgggca cgacctgcgg 1920 ctccgcgcgg gcatcgacac cgggtcggcg gccagcgggc tggtggggcg gtccacgttg 1980 gcgtacgaca tgtggggttc ggcggtcgat gtcgctaacc aggtgcagcg cggctccccc 2040 cagcccggca tctacgtcac ctcgcgggtg cacgaggtca tgcaggaaac tctcgacttc 2100 gtcgccgccg gggaggtcgt cggcgagcgc ggcgtcgaga cggtctggcg gttgcagggc 2160 caccggcgat ga 2172 <210> SEQ ID NO 174 <211> LENGTH: 722 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 174 Met Thr Ile Leu Pro Trp Asn Ala Arg Thr Ser Glu His Pro Thr Arg 1 5 10 15 Lys Arg Arg Gly Arg Tyr His Leu Leu Ser Arg Met Ser Ile Gln Ser 20 25 30 Lys Leu Leu Leu Met Leu Leu Leu Thr Ser Ile Leu Ser Ala Ala Val 35 40 45 Val Gly Phe Ile Gly Tyr Gln Ser Gly Arg Ser Ser Leu Arg Ala Ser 50 55 60 Val Phe Asp Arg Leu Thr Asp Ile Arg Glu Ser Gln Ser Arg Gly Leu 65 70 75 80 Glu Asn Gln Phe Ala Asp Leu Lys Asn Ser Met Val Ile Tyr Ser Arg 85 90 95 Gly Ser Thr Ala Thr Glu Ala Ile Gly Ala Phe Ser Asp Gly Phe Arg 100 105 110 Gln Leu Gly Asp Ala Thr Ile Asn Thr Gly Gln Ala Ala Ser Leu Arg 115 120 125 Arg Tyr Tyr Asp Arg Thr Phe Ala Asn Thr Thr Leu Asp Asp Ser Gly 130 135 140 Asn Arg Val Asp Val Arg Ala Leu Ile Pro Lys Ser Asn Pro Gln Arg 145 150 155 160 Tyr Leu Gln Ala Leu Tyr Thr Pro Pro Phe Gln Asn Trp Glu Lys Ala 165 170 175 Ile Ala Phe Asp Asp Ala Arg Asp Gly Ser Ala Trp Ser Ala Ala Asn 180 185 190 Ala Arg Phe Asn Glu Phe Phe Arg Glu Ile Val His Arg Phe Asn Phe 195 200 205 Glu Asp Leu Met Leu Leu Asp Leu Glu Gly Asn Val Val Tyr Ser Ala 210 215 220 Tyr Lys Gly Pro Asp Leu Gly Thr Asn Ile Val Asn Gly Pro Tyr Arg 225 230 235 240 Asn Arg Glu Leu Ser Glu Ala Tyr Glu Lys Ala Val Ala Ser Asn Ser 245 250 255 Ile Asp Tyr Val Gly Val Thr Asp Phe Gly Trp Tyr Leu Pro Ala Glu 260 265 270 Glu Pro Thr Ala Trp Phe Leu Ser Pro Val Gly Leu Lys Asp Arg Val 275 280 285 Asp Gly Val Met Ala Val Gln Phe Pro Ile Ala Arg Ile Asn Glu Leu 290 295 300 Met Thr Ala Arg Gly Gln Trp Arg Asp Thr Gly Met Gly Asp Thr Gly 305 310 315 320 Glu Thr Ile Leu Val Gly Pro Asp Asn Leu Met Arg Ser Asp Ser Arg 325 330 335 Leu Phe Arg Glu Asn Arg Glu Lys Phe Leu Ala Asp Val Val Glu Gly 340 345 350 Gly Thr Pro Pro Glu Val Ala Asp Glu Ser Val Asp Arg Arg Gly Thr 355 360 365 Thr Leu Val Gln Pro Val Thr Thr Arg Ser Val Glu Glu Ala Gln Arg 370 375 380 Gly Asn Thr Gly Thr Thr Ile Glu Asp Asp Tyr Leu Gly His Glu Ala 385 390 395 400 Leu Gln Ala Tyr Ser Pro Val Asp Leu Pro Gly Leu His Trp Val Ile 405 410 415 Val Ala Lys Ile Asp Thr Asp Glu Ala Phe Ala Pro Val Ala Gln Phe 420 425 430 Thr Arg Thr Leu Val Leu Ser Thr Val Ile Ile Ile Phe Gly Val Ser 435 440 445 Leu Ala Ala Met Leu Leu Ala Arg Leu Phe Val Arg Pro Ile Arg Arg 450 455 460 Leu Gln Ala Gly Ala Gln Gln Ile Ser Gly Gly Asp Tyr Arg Leu Ala 465 470 475 480 Leu Pro Val Leu Ser Arg Asp Glu Phe Gly Asp Leu Thr Thr Ala Phe 485 490 495 Asn Asp Met Ser Arg Asn Leu Ser Ile Lys Asp Glu Leu Leu Gly Glu 500 505 510 Glu Arg Ala Glu Asn Gln Arg Leu Met Leu Ser Leu Met Pro Glu Pro 515 520 525 Val Met Gln Arg Tyr Leu Asp Gly Glu Glu Thr Ile Ala Gln Asp His 530 535 540 Lys Asn Val Thr Val Ile Phe Ala Asp Met Met Gly Leu Asp Glu Leu 545 550 555 560 Ser Arg Met Leu Thr Ser Glu Glu Leu Met Val Val Val Asn Asp Leu 565 570 575 Thr Arg Gln Phe Asp Ala Ala Ala Glu Ser Leu Gly Val Asp His Val 580 585 590 Arg Thr Leu His Asp Gly Tyr Leu Ala Ser Cys Gly Leu Gly Val Pro 595 600 605 Arg Leu Asp Asn Val Arg Arg Thr Val Asn Phe Ala Ile Glu Met Asp 610 615 620 Arg Ile Ile Asp Arg His Ala Ala Glu Ser Gly His Asp Leu Arg Leu 625 630 635 640 Arg Ala Gly Ile Asp Thr Gly Ser Ala Ala Ser Gly Leu Val Gly Arg 645 650 655 Ser Thr Leu Ala Tyr Asp Met Trp Gly Ser Ala Val Asp Val Ala Asn 660 665 670 Gln Val Gln Arg Gly Ser Pro Gln Pro Gly Ile Tyr Val Thr Ser Arg 675 680 685 Val His Glu Val Met Gln Glu Thr Leu Asp Phe Val Ala Ala Gly Glu 690 695 700 Val Val Gly Glu Arg Gly Val Glu Thr Val Trp Arg Leu Gln Gly His 705 710 715 720 Arg Arg <210> SEQ ID NO 175 <211> LENGTH: 898 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 175 gagcaaccgt tccggctcgg cgactggatc accgtcccca ccgcggcggg ccggccgtcc 60 gcccacggcc gcgtggtgga agtcaactgg cgtgcaacac atatcgacac cggcggcaac 120 ctgctggtaa tgcccaacgc cgaactcgcc ggcgcgtcgt tcaccaatta cagccggccc 180 gtgggagagc accggctgac cgtcgtcacc accttcaacg ccgcggacac ccccgatgat 240 gtctgcgaga tgctgtcgtc ggtcgcggcg tcgctgcccg aactgcgcac cgacggacag 300 atcgccacgc tctatctcgg tgcggccgaa tacgagaagt cgatcccgtt gcacacaccc 360 gcggtggacg actcggtcag gagcacgtac ctgcgatggg tctggtacgc cgcgcgccgg 420 caggaacttc gcctaacggc gtcgccgacg attcgacacg ccggaacgga tcgcctcggc 480 catgcgggct gtggcgtcca cactgcgctt ggcagacgac gaacagcagg agatcgccga 540 cgtggtgcgt ctggtccgtt acggcaacgg ggaacgcctc cagcagccgg gtcaggtacc 600 gaccgggatg aggttcatcg tagacggcag ggtgagtctg tccgtgatcg atcaggacgg 660 cgacgtgatc ccggcgcggg tgctcgagcg tggcgacttc ctggggcaga ccacgctgac 720 gcgggaaccg gtactggcga ccgcgcacgc gctggaggaa gtcaccgtgc tggagatggc 780 ccgtgacgag atcgagcgcc tggtgcaccg aaagccgatc ctgctgcacg tgatcggggc 840 cgtgatcgcc gaccggcgcg cgcacgaact tcggttgatg gcggactcgc aggactga 898 <210> SEQ ID NO 176 <211> LENGTH: 2013 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 176 ggctatcagt ccggacggtc ctcgctgcgc gcatcggtgt tcgaccgcct caccgacatc 60 cgcgagtcgc agtcgcgcgg gttggagaat cagttcgcgg acctgaagaa ctcgatggtg 120 atttactcgc gcggcagcac tgccacggag gcgatcggcg cgttcagcga cggtttccgt 180 cagctcggcg atgcgacgat caataccggg caggcggcgt cattgcgccg ttactacgac 240 cggacgttcg ccaacaccac cctcgacgac agcggaaacc gcgtcgacgt ccgcgcgctc 300 atcccgaaat ccaaccccca gcgctatctg caggcgctct ataccccgcc gtttcagaac 360 tgggagaagg cgatcgcgtt cgacgacgcg cgcgacggca gcgcctggtc ggccgccaat 420 gccagattca acgagttctt ccgcgagatc gtgcaccgct tcaacttcga ggatctgatg 480 ctgctcgacc tcgagggcaa cgtggtgtac tccgcctaca aggggccgga tctcgggaca 540 aacatcgtca acggccccta tcgcaaccgg gaactgtcgg aagcctacga gaaggcggtc 600 gcgtcgaact cgatcgacta tgtcggtgtc accgacttcg ggtggtacct gcctgccgag 660 gaaccgaccg cctggttcct gtccccggtc gggttgaagg accgagtcga cggtgtgatg 720 gcggtccagt tcccgatcgc gcggatcaac gaattgatga cggcgcgggg acagtggcgt 780 gacaccggga tgggagacac cggtgagacc atcctggtcg gaccggacaa tctgatgcgc 840 tcggactccc ggctgttccg cgagaaccgg gagaagttcc tggccgacgt cgtcgagggg 900 ggaaccccgc cggaggtcgc cgacgaatcg gttgaccgcc gcggcaccac gctggtgcag 960 ccggtgacca cccgctccgt cgaggaggcc caacgcggca acaccgggac gacgatcgag 1020 gacgactatc tcggccacga ggcgttacag gcgtactcac cggtggacct gccgggactg 1080 cactgggtga tcgtggccaa gatcgacacc gacgaggcgt tcgccccggt ggcgcagttc 1140 accaggaccc tggtgctgtc gacggtgatc atcatcttcg gcgtgtcgct ggcggccatg 1200 ctgctggcgc ggttgttcgt ccgtccgatc cggcggttgc aggccggcgc ccagcagatc 1260 agcggcggtg actaccgcct cgctctgccg gtgttgtctc gtgacgaatt cggcgatctg 1320 acaacagctt tcaacgacat gagtcgcaat ctgtcgatca aggacgagct gctcggcgag 1380 gagcgcgccg agaaccaacg gctgatgctg tccctgatgc ccgaaccggt gatgcagcgc 1440 tacctcgacg gggaggagac gatcgcccag gaccacaaga acgtcacggt gatcttcgcc 1500 gacatgatgg gcctcgacga gttgtcgcgc atgttgacct ccgaggaact gatggtggtg 1560 gtcaacgacc tgacccgcca gttcgacgcc gccgccgaga gtctcggggt cgaccacgtg 1620 cggacgctgc acgacgggta cctggccagc tgcgggttag gcgtgccgcg gctggacaac 1680 gtccggcgca cggtcaattt cgcgatcgaa atggaccgca tcatcgaccg gcacgccgcc 1740 gagtccgggc acgacctgcg gctccgcgcg ggcatcgaca ccgggtcggc ggccagcggg 1800 ctggtggggc ggtccacgtt ggcgtacgac atgtggggtt cggcggtcga tgtcgctaac 1860 caggtgcagc gcggctcccc ccagcccggc atctacgtca cctcgcgggt gcacgaggtc 1920 atgcaggaaa ctctcgactt cgtcgccgcc ggggaggtcg tcggcgagcg cggcgtcgag 1980 acggtctggc ggttgcaggg ccaccggcga tga 2013 <210> SEQ ID NO 177 <211> LENGTH: 297 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (145)...(145) <221> NAME/KEY: UNSURE <222> LOCATION: (151)...(151) <400> SEQUENCE: 177 Glu Gln Pro Phe Arg Leu Gly Asp Trp Ile Thr Val Pro Thr Ala Ala 1 5 10 15 Gly Arg Pro Ser Ala His Gly Arg Val Val Glu Val Asn Trp Arg Ala 20 25 30 Thr His Ile Asp Thr Gly Gly Asn Leu Leu Val Met Pro Asn Ala Glu 35 40 45 Leu Ala Gly Ala Ser Phe Thr Asn Tyr Ser Arg Pro Val Gly Glu His 50 55 60 Arg Leu Thr Val Val Thr Thr Phe Asn Ala Ala Asp Thr Pro Asp Asp 65 70 75 80 Val Cys Glu Met Leu Ser Ser Val Ala Ala Ser Leu Pro Glu Leu Arg 85 90 95 Thr Asp Gly Gln Ile Ala Thr Leu Tyr Leu Gly Ala Ala Glu Tyr Glu 100 105 110 Lys Ser Ile Pro Leu His Thr Pro Ala Val Asp Asp Ser Val Arg Ser 115 120 125 Thr Tyr Leu Arg Trp Val Trp Tyr Ala Ala Arg Arg Gln Glu Leu Arg 130 135 140 Xaa Asn Gly Val Ala Asp Xaa Phe Asp Thr Pro Glu Arg Ile Ala Ser 145 150 155 160 Ala Met Arg Ala Val Ala Ser Thr Leu Arg Leu Ala Asp Asp Glu Gln 165 170 175 Gln Glu Ile Ala Asp Val Val Arg Leu Val Arg Tyr Gly Asn Gly Glu 180 185 190 Arg Leu Gln Gln Pro Gly Gln Val Pro Thr Gly Met Arg Phe Ile Val 195 200 205 Asp Gly Arg Val Ser Leu Ser Val Ile Asp Gln Asp Gly Asp Val Ile 210 215 220 Pro Ala Arg Val Leu Glu Arg Gly Asp Phe Leu Gly Gln Thr Thr Leu 225 230 235 240 Thr Arg Glu Pro Val Leu Ala Thr Ala His Ala Leu Glu Glu Val Thr 245 250 255 Val Leu Glu Met Ala Arg Asp Glu Ile Glu Arg Leu Val His Arg Lys 260 265 270 Pro Ile Leu Leu His Val Ile Gly Ala Val Ala Asp Arg Arg Ala His 275 280 285 Glu Leu Arg Leu Met Asp Ser Gln Asp 290 295 <210> SEQ ID NO 178 <211> LENGTH: 670 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 178 Gly Tyr Gln Ser Gly Arg Ser Ser Leu Arg Ala Ser Val Phe Asp Arg 1 5 10 15 Leu Thr Asp Ile Arg Glu Ser Gln Ser Arg Gly Leu Glu Asn Gln Phe 20 25 30 Ala Asp Leu Lys Asn Ser Met Val Ile Tyr Ser Arg Gly Ser Thr Ala 35 40 45 Thr Glu Ala Ile Gly Ala Phe Ser Asp Gly Phe Arg Gln Leu Gly Asp 50 55 60 Ala Thr Ile Asn Thr Gly Gln Ala Ala Ser Leu Arg Arg Tyr Tyr Asp 65 70 75 80 Arg Thr Phe Ala Asn Thr Thr Leu Asp Asp Ser Gly Asn Arg Val Asp 85 90 95 Val Arg Ala Leu Ile Pro Lys Ser Asn Pro Gln Arg Tyr Leu Gln Ala 100 105 110 Leu Tyr Thr Pro Pro Phe Gln Asn Trp Glu Lys Ala Ile Ala Phe Asp 115 120 125 Asp Ala Arg Asp Gly Ser Ala Trp Ser Ala Ala Asn Ala Arg Phe Asn 130 135 140 Glu Phe Phe Arg Glu Ile Val His Arg Phe Asn Phe Glu Asp Leu Met 145 150 155 160 Leu Leu Asp Leu Glu Gly Asn Val Val Tyr Ser Ala Tyr Lys Gly Pro 165 170 175 Asp Leu Gly Thr Asn Ile Val Asn Gly Pro Tyr Arg Asn Arg Glu Leu 180 185 190 Ser Glu Ala Tyr Glu Lys Ala Val Ala Ser Asn Ser Ile Asp Tyr Val 195 200 205 Gly Val Thr Asp Phe Gly Trp Tyr Leu Pro Ala Glu Glu Pro Thr Ala 210 215 220 Trp Phe Leu Ser Pro Val Gly Leu Lys Asp Arg Val Asp Gly Val Met 225 230 235 240 Ala Val Gln Phe Pro Ile Ala Arg Ile Asn Glu Leu Met Thr Ala Arg 245 250 255 Gly Gln Trp Arg Asp Thr Gly Met Gly Asp Thr Gly Glu Thr Ile Leu 260 265 270 Val Gly Pro Asp Asn Leu Met Arg Ser Asp Ser Arg Leu Phe Arg Glu 275 280 285 Asn Arg Glu Lys Phe Leu Ala Asp Val Val Glu Gly Gly Thr Pro Pro 290 295 300 Glu Val Ala Asp Glu Ser Val Asp Arg Arg Gly Thr Thr Leu Val Gln 305 310 315 320 Pro Val Thr Thr Arg Ser Val Glu Glu Ala Gln Arg Gly Asn Thr Gly 325 330 335 Thr Thr Ile Glu Asp Asp Tyr Leu Gly His Glu Ala Leu Gln Ala Tyr 340 345 350 Ser Pro Val Asp Leu Pro Gly Leu His Trp Val Ile Val Ala Lys Ile 355 360 365 Asp Thr Asp Glu Ala Phe Ala Pro Val Ala Gln Phe Thr Arg Thr Leu 370 375 380 Val Leu Ser Thr Val Ile Ile Ile Phe Gly Val Ser Leu Ala Ala Met 385 390 395 400 Leu Leu Ala Arg Leu Phe Val Arg Pro Ile Arg Arg Leu Gln Ala Gly 405 410 415 Ala Gln Gln Ile Ser Gly Gly Asp Tyr Arg Leu Ala Leu Pro Val Leu 420 425 430 Ser Arg Asp Glu Phe Gly Asp Leu Thr Thr Ala Phe Asn Asp Met Ser 435 440 445 Arg Asn Leu Ser Ile Lys Asp Glu Leu Leu Gly Glu Glu Arg Ala Glu 450 455 460 Asn Gln Arg Leu Met Leu Ser Leu Met Pro Glu Pro Val Met Gln Arg 465 470 475 480 Tyr Leu Asp Gly Glu Glu Thr Ile Ala Gln Asp His Lys Asn Val Thr 485 490 495 Val Ile Phe Ala Asp Met Met Gly Leu Asp Glu Leu Ser Arg Met Leu 500 505 510 Thr Ser Glu Glu Leu Met Val Val Val Asn Asp Leu Thr Arg Gln Phe 515 520 525 Asp Ala Ala Ala Glu Ser Leu Gly Val Asp His Val Arg Thr Leu His 530 535 540 Asp Gly Tyr Leu Ala Ser Cys Gly Leu Gly Val Pro Arg Leu Asp Asn 545 550 555 560 Val Arg Arg Thr Val Asn Phe Ala Ile Glu Met Asp Arg Ile Ile Asp 565 570 575 Arg His Ala Ala Glu Ser Gly His Asp Leu Arg Leu Arg Ala Gly Ile 580 585 590 Asp Thr Gly Ser Ala Ala Ser Gly Leu Val Gly Arg Ser Thr Leu Ala 595 600 605 Tyr Asp Met Trp Gly Ser Ala Val Asp Val Ala Asn Gln Val Gln Arg 610 615 620 Gly Ser Pro Gln Pro Gly Ile Tyr Val Thr Ser Arg Val His Glu Val 625 630 635 640 Met Gln Glu Thr Leu Asp Phe Val Ala Ala Gly Glu Val Val Gly Glu 645 650 655 Arg Gly Val Glu Thr Val Trp Arg Leu Gln Gly His Arg Arg 660 665 670 <210> SEQ ID NO 179 <211> LENGTH: 520 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 179 gtgatcgacg aaaccctctt ccatgccgag gagaagatgg agaaggccgt ctcggtggca 60 cccgacgacc tggcgtcgat tcgtaccggc cgcgcgaacc ccggcatgtt caaccggatc 120 aacatcgact actacggcgc ctccaccccg atcacgcagc tgtccagcat caacgtgccc 180 gaggcgcgca tggtggtgat caagccctac gaggcgagcc agctgcgcct catcgaggat 240 gcgatccgca actccgacct cggcgtcaat ccgaccaacg acggcaacat catccgggtg 300 tcgatcccgc agctcaccga ggagcgccgc cgcgacctgg tcaagcaggc caaggccaag 360 ggcgaggacg ccaaggtgtc ggtgcgcaac atccgtcgca acgatatgaa cacctttcgc 420 atcgcaccgg tacggctgcc gacgccaccg ccgtcgtaga agcgacagag gatcgcaggt 480 aacggtattg gccacgcctt ctgtggcggg ccgacaccac 520 <210> SEQ ID NO 180 <211> LENGTH: 1071 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 180 cgtggggaag gattgcactc tatgagcgaa atcgcccgtc cctggcgggt tctggcaggt 60 ggcatcggtg cctgcgccgc gggtatcgcc ggggtgctga gcatcgcggt caccacggcg 120 tcggcccagc cgggcctccc gcagcccccg ctgcccgccc ctgccacagt gacgcaaacc 180 gtcacggttg cgcccaacgc cgcgccacaa ctcatcccgc gccccggtgt gacgcctgcc 240 accggcggcg ccgccgcggt gcccgccggg gtgagcgccc cggcggtcgc gccggccccc 300 gcgctgcccg cccgcccggt gtccacgatc gccccggcca cctcgggcac gctcagcgag 360 ttcttcgccg ccaagggcgt cacgatggag ccgcagtcca gccgcgactt ccgcgccctc 420 aacatcgtgc tgccgaagcc gcggggctgg gagcacatcc cggacccgaa cgtgccggac 480 gcgttcgcgg tgctggccga ccgggtcggc ggcaacggcc tgtactcgtc gaacgcccag 540 gtggtggtct acaaactcgt cggcgagttc gaccccaagg aagcgatcag ccacggcttc 600 gtcgacagcc agaagctgcc ggcgtggcgt tccaccgacg cgtcgctggc cgacttcggc 660 ggaatgccgt cctcgctgat cgagggcacc taccgcgaga acaacatgaa gctgaacacg 720 tcccggcgcc acgtcattgc caccgcgggg cccgaccact acctggtgtc gctgtcggtg 780 accaccagcg tcgaacaggc cgtggccgaa gccgcggagg ccaccgacgc gattgtcaac 840 ggcttcaagg tcagcgttcc gggtccgggt ccggccgcac cgccacctgc acccggtgcc 900 cccggtgtcc cgcccgcccc cggcgccccg gcgctgccgc tggccgtcgc accacccccg 960 gctcccgctg ttcccgccgt ggcgcccgcg ccacagctgc tgggactgca gggatagacg 1020 tcgtcgtccc ccgggcgaag cctggcgccc gggggacgac ggcccctttc t 1071 <210> SEQ ID NO 181 <211> LENGTH: 152 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 181 Val Ile Asp Glu Thr Leu Phe His Ala Glu Glu Lys Met Glu Lys Ala 1 5 10 15 Val Ser Val Ala Pro Asp Asp Leu Ala Ser Ile Arg Thr Gly Arg Ala 20 25 30 Asn Pro Gly Met Phe Asn Arg Ile Asn Ile Asp Tyr Tyr Gly Ala Ser 35 40 45 Thr Pro Ile Thr Gln Leu Ser Ser Ile Asn Val Pro Glu Ala Arg Met 50 55 60 Val Val Ile Lys Pro Tyr Glu Ala Ser Gln Leu Arg Leu Ile Glu Asp 65 70 75 80 Ala Ile Arg Asn Ser Asp Leu Gly Val Asn Pro Thr Asn Asp Gly Asn 85 90 95 Ile Ile Arg Val Ser Ile Pro Gln Leu Thr Glu Glu Arg Arg Arg Asp 100 105 110 Leu Val Lys Gln Ala Lys Ala Lys Gly Glu Asp Ala Lys Val Ser Val 115 120 125 Arg Asn Ile Arg Arg Asn Asp Met Asn Thr Phe Arg Ile Ala Pro Val 130 135 140 Arg Leu Pro Thr Pro Pro Pro Ser 145 150 <210> SEQ ID NO 182 <211> LENGTH: 331 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 182 Met Ser Glu Ile Ala Arg Pro Trp Arg Val Leu Ala Gly Gly Ile Gly 1 5 10 15 Ala Cys Ala Ala Gly Ile Ala Gly Val Leu Ser Ile Ala Val Thr Thr 20 25 30 Ala Ser Ala Gln Pro Gly Leu Pro Gln Pro Pro Leu Pro Ala Pro Ala 35 40 45 Thr Val Thr Gln Thr Val Thr Val Ala Pro Asn Ala Ala Pro Gln Leu 50 55 60 Ile Pro Arg Pro Gly Val Thr Pro Ala Thr Gly Gly Ala Ala Ala Val 65 70 75 80 Pro Ala Gly Val Ser Ala Pro Ala Val Ala Pro Ala Pro Ala Leu Pro 85 90 95 Ala Arg Pro Val Ser Thr Ile Ala Pro Ala Thr Ser Gly Thr Leu Ser 100 105 110 Glu Phe Phe Ala Ala Lys Gly Val Thr Met Glu Pro Gln Ser Ser Arg 115 120 125 Asp Phe Arg Ala Leu Asn Ile Val Leu Pro Lys Pro Arg Gly Trp Glu 130 135 140 His Ile Pro Asp Pro Asn Val Pro Asp Ala Phe Ala Val Leu Ala Asp 145 150 155 160 Arg Val Gly Gly Asn Gly Leu Tyr Ser Ser Asn Ala Gln Val Val Val 165 170 175 Tyr Lys Leu Val Gly Glu Phe Asp Pro Lys Glu Ala Ile Ser His Gly 180 185 190 Phe Val Asp Ser Gln Lys Leu Pro Ala Trp Arg Ser Thr Asp Ala Ser 195 200 205 Leu Ala Asp Phe Gly Gly Met Pro Ser Ser Leu Ile Glu Gly Thr Tyr 210 215 220 Arg Glu Asn Asn Met Lys Leu Asn Thr Ser Arg Arg His Val Ile Ala 225 230 235 240 Thr Ala Gly Pro Asp His Tyr Leu Val Ser Leu Ser Val Thr Thr Ser 245 250 255 Val Glu Gln Ala Val Ala Glu Ala Ala Glu Ala Thr Asp Ala Ile Val 260 265 270 Asn Gly Phe Lys Val Ser Val Pro Gly Pro Gly Pro Ala Ala Pro Pro 275 280 285 Pro Ala Pro Gly Ala Pro Gly Val Pro Pro Ala Pro Gly Ala Pro Ala 290 295 300 Leu Pro Leu Ala Val Ala Pro Pro Pro Ala Pro Ala Val Pro Ala Val 305 310 315 320 Ala Pro Ala Pro Gln Leu Leu Gly Leu Gln Gly 325 330 <210> SEQ ID NO 183 <211> LENGTH: 207 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 183 acctacgagt tcgagaacaa ggtcacgggc ggccgcatcc cgcgcgagta catcccgtcg 60 gtggatgccg gcgcgcagga cgccatgcag tacggcgtgc tggccggcta cccgctggtt 120 aacgtcaagc tgacgctgct cgacggtgcc taccacgaag tcgactcgtc ggaaatggca 180 ttcaaggttg ccggctccca ggtcata 207 <210> SEQ ID NO 184 <211> LENGTH: 69 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 184 Thr Tyr Glu Phe Glu Asn Lys Val Thr Gly Gly Arg Ile Pro Arg Glu 1 5 10 15 Tyr Ile Pro Ser Val Asp Ala Gly Ala Gln Asp Ala Met Gln Tyr Gly 20 25 30 Val Leu Ala Gly Tyr Pro Leu Val Asn Val Lys Leu Thr Leu Leu Asp 35 40 45 Gly Ala Tyr His Glu Val Asp Ser Ser Glu Met Ala Phe Lys Val Ala 50 55 60 Gly Ser Gln Val Ile 65 <210> SEQ ID NO 185 <211> LENGTH: 898 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (637)...(637) <221> NAME/KEY: unsure <222> LOCATION: (662)...(662) <400> SEQUENCE: 185 cgacctccac ccgggcgtga ggccaaccac taggctggtc accagtagtc gacggcacac 60 ttcaccgaaa aaatgaggac agaggagaca cccgtgacga tccgtgttgg tgtgaacggc 120 ttcggccgta tcggacgcaa cttcttccgc gcgctggacg cgcagaaggc cgaaggcaag 180 aacaaggaca tcgagatcgt cgcggtcaac gacctcaccg acaacgccac gctggcgcac 240 ctgctgaagt tcgactcgat cctgggccgg ctgccctacg acgtgagcct cgaaggcgag 300 gacaccatcg tcgtcggcag caccaagatc aaggcgctcg aggtcaagga aggcccggcg 360 gcgctgccct ggggcgacct gggcgtcgac gtcgtcgtcg agtccaccgg catcttcacc 420 aagcgcgaca aggcccaggg ccacctcgac gcgggcgcca agaaggtcat catctccgcg 480 ccggccaccg atgaggacat caccatcgtg ctcggcgtca acgacgacaa gtacgacggc 540 agccagaaca tcatctccaa cgcgtcgtgc accacgaact gcctcggccc gctggcgaag 600 gtcatcaacg acgagttcgg catcgtcaag ggcctgntga ccaccatcca cgcctacacc 660 cnggtccaga acctgcagga cggcccgcac aaggatctgc gccgggcccg cgccgccgcg 720 ctgaacatcg tgccgacctc caccggtgcc gccaaggcca tcggactggt gctgcccgag 780 ctgaagggca agctcgacgg ctacgcgctg cgggtgccga tccccaccgg ctcggtcacc 840 gacctgaccg ccgagctggg caagtcggcc accgtggacg agatcaacgc cgcgatga 898 <210> SEQ ID NO 186 <211> LENGTH: 268 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (182)...(182) <221> NAME/KEY: UNSURE <222> LOCATION: (190)...(190) <400> SEQUENCE: 186 Val Thr Ile Arg Val Gly Val Asn Gly Phe Gly Arg Ile Gly Arg Asn 1 5 10 15 Phe Phe Arg Ala Leu Asp Ala Gln Lys Ala Glu Gly Lys Asn Lys Asp 20 25 30 Ile Glu Ile Val Ala Val Asn Asp Leu Thr Asp Asn Ala Thr Leu Ala 35 40 45 His Leu Leu Lys Phe Asp Ser Ile Leu Gly Arg Leu Pro Tyr Asp Val 50 55 60 Ser Leu Glu Gly Glu Asp Thr Ile Val Val Gly Ser Thr Lys Ile Lys 65 70 75 80 Ala Leu Glu Val Lys Glu Gly Pro Ala Ala Leu Pro Trp Gly Asp Leu 85 90 95 Gly Val Asp Val Val Val Glu Ser Thr Gly Ile Phe Thr Lys Arg Asp 100 105 110 Lys Ala Gln Gly His Leu Asp Ala Gly Ala Lys Lys Val Ile Ile Ser 115 120 125 Ala Pro Ala Thr Asp Glu Asp Ile Thr Ile Val Leu Gly Val Asn Asp 130 135 140 Asp Lys Tyr Asp Gly Ser Gln Asn Ile Ile Ser Asn Ala Ser Cys Thr 145 150 155 160 Thr Asn Cys Leu Gly Pro Leu Ala Lys Val Ile Asn Asp Glu Phe Gly 165 170 175 Ile Val Lys Gly Leu Xaa Thr Thr Ile His Ala Tyr Thr Xaa Val Gln 180 185 190 Asn Leu Gln Asp Gly Pro His Lys Asp Leu Arg Arg Ala Arg Ala Ala 195 200 205 Ala Leu Asn Ile Val Pro Thr Ser Thr Gly Ala Ala Lys Ala Ile Gly 210 215 220 Leu Val Leu Pro Glu Leu Lys Gly Lys Leu Asp Gly Tyr Ala Leu Arg 225 230 235 240 Val Pro Ile Pro Thr Gly Ser Val Thr Asp Leu Thr Ala Glu Leu Gly 245 250 255 Lys Ser Ala Thr Val Asp Glu Ile Asn Ala Ala Met 260 265 <210> SEQ ID NO 187 <211> LENGTH: 41 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (39)...(39) <400> SEQUENCE: 187 Met Asn Lys Ala Glu Leu Ile Asp Val Leu Thr Glu Lys Leu Gly Ser 1 5 10 15 Asp Arg Arg Gln Ala Thr Ala Ala Val Glu Asn Val Val Asp Thr Ile 20 25 30 Val Ala Ala Val Pro Lys Xaa Val Val 35 40 <210> SEQ ID NO 188 <211> LENGTH: 26 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <221> NAME/KEY: unsure <222> LOCATION: (12)...(12) <400> SEQUENCE: 188 atgaayaarg cngarctsat ygaygt 26 <210> SEQ ID NO 189 <211> LENGTH: 20 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <400> SEQUENCE: 189 atsgtrtgva cvacgttytc 20 <210> SEQ ID NO 190 <211> LENGTH: 84 <212> TYPE: DNA <213> ORGANISM: Artificial Sequence <220> FEATURE: <223> OTHER INFORMATION: Made in a lab <221> NAME/KEY: unsure <222> LOCATION: (2)...(2) <400> SEQUENCE: 190 gnactcattg acgtactcac tgagaagctg ggctcggatt gtcggcaagc gactgcggca 60 atggagaacg tggtccacac cata 84 <210> SEQ ID NO 191 <211> LENGTH: 337 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: unsure <222> LOCATION: (2)...(2) <400> SEQUENCE: 191 gnactcattg acgtactcac tgagaagctg ggctcggatt gtcggcaagc gactgcggcg 60 gtggagaatg ttgtcgacac catcgtgcgc gccgtgcaca agggtgagag cgtcaccatc 120 acgggcttcg gtgttttcga gcagcgtcgt cgcgcagcac gcgtggcacg caatccgcgc 180 accggcgaga ccgtgaaggt caagcccacc tcagtcccgg cattccgtcc cggcgctcag 240 ttcaaggctg ttgtctctgg cgcacagaag cttccggccg agggtccggc ggtcaagcgc 300 ggtgtgaccg cgacgagcac cgcccgcaag gcagcca 337 <210> SEQ ID NO 192 <211> LENGTH: 111 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (1)...(1) <400> SEQUENCE: 192 Xaa Leu Ile Asp Val Leu Thr Glu Lys Leu Gly Ser Asp Arg Gln Ala 1 5 10 15 Thr Ala Ala Val Glu Asn Val Val Asp Thr Ile Val Arg Ala Val His 20 25 30 Lys Gly Glu Ser Val Thr Ile Thr Gly Phe Gly Val Phe Glu Gln Arg 35 40 45 Arg Arg Ala Ala Arg Val Ala Arg Asn Pro Arg Thr Gly Glu Thr Val 50 55 60 Lys Val Lys Pro Thr Ser Val Pro Ala Phe Arg Pro Gly Ala Gln Phe 65 70 75 80 Lys Ala Val Val Ser Gly Ala Gln Lys Leu Pro Ala Glu Gly Pro Ala 85 90 95 Val Lys Arg Gly Val Thr Ala Thr Ser Thr Ala Arg Lys Ala Ala 100 105 110 <210> SEQ ID NO 193 <211> LENGTH: 1164 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 193 ggtggcgcgc atcgagaagc gcccgccccg gttcacgggc gcctgatcat ggtgcgggcg 60 gcgctgcgct acggcttcgg gacggcctca ctgctggccg gcgggttcgt gctgcgcgcc 120 ctgcagggca cgcctgccgc cctcggcgcg actccgggcg aggtcgcgcc ggtggcgcgc 180 cgctcgccga actaccgcga cggcaagttc gtcaacctgg agcccccgtc gggcatcacg 240 atggatcgcg acctgcagcg gatgctgttg cgcgatctgg ccaacgccgc atcccagggc 300 aagccgcccg gaccgatccc gctggccgag ccgccgaagg gggatcccac tcccgcgccg 360 gcggcggcca gctggtacgg ccattccagc gtgctgatcg aggtcgacgg ctaccgcgtg 420 ctggccgacc cggtgtggag caacagatgt tcgccctcac gggcggtcgg accgcagcgc 480 atgcacgacg tcccggtgcc gctggaggcg cttcccgccg tggacgcggt ggtgatcagc 540 cacgaccact acgaccacct cgacatcgac accatcgtcg cgttggcgca cacccagcgg 600 gccccgttcg tggtgccgtt gggcatcggc gcacacctgc gcaagtgggg cgtccccgag 660 gcgcggatcg tcgagttgga ctggcacgaa gcccaccgca tagacgacct gacgctggtc 720 tgcacccccg cccggcactt ctccggacgg ttgttctccc gcgactcgac gctgtgggcg 780 tcgtgggtgg tcaccggctc gtcgcacaag gcgttcttcg gtggcgacac cggatacacg 840 aagagcttcg ccgagatcgg cgacgagtac ggtccgttcg atctgaccct gctgccgatc 900 ggggcctacc atcccgcgtt cgccgacatc cacatgaacc ccgaggaggc ggtgcgcgcc 960 catctggacc tgaccgaggt ggacaacagc ctgatggtgc ccatccactg ggcgacattc 1020 cgcctcgccc cgcatccgtg gtccgagccc gccgaacgcc tgctgaccgc tgccgacgcc 1080 gagcgggtac gcctgaccgt gccgattccc ggtcagcggg tggacccgga gtcgacgttc 1140 gacccgtggt ggcggttctg aacc 1164 <210> SEQ ID NO 194 <211> LENGTH: 370 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 194 Met Val Arg Ala Ala Leu Arg Tyr Gly Phe Gly Thr Ala Ser Leu Leu 1 5 10 15 Ala Gly Gly Phe Val Leu Arg Ala Leu Gln Gly Thr Pro Ala Ala Leu 20 25 30 Gly Ala Thr Pro Gly Glu Val Ala Pro Val Ala Arg Arg Ser Pro Asn 35 40 45 Tyr Arg Asp Gly Lys Phe Val Asn Leu Glu Pro Pro Ser Gly Ile Thr 50 55 60 Met Asp Arg Asp Leu Gln Arg Met Leu Leu Arg Asp Leu Ala Asn Ala 65 70 75 80 Ala Ser Gln Gly Lys Pro Pro Gly Pro Ile Pro Leu Ala Glu Pro Pro 85 90 95 Lys Gly Asp Pro Thr Pro Ala Pro Ala Ala Ala Ser Trp Tyr Gly His 100 105 110 Ser Ser Val Leu Ile Glu Val Asp Gly Tyr Arg Val Leu Ala Asp Pro 115 120 125 Val Trp Ser Asn Arg Cys Ser Pro Ser Arg Ala Val Gly Pro Gln Arg 130 135 140 Met His Asp Val Pro Val Pro Leu Glu Ala Leu Pro Ala Val Asp Ala 145 150 155 160 Val Val Ile Ser His Asp His Tyr Asp His Leu Asp Ile Asp Thr Ile 165 170 175 Val Ala Leu Ala His Thr Gln Arg Ala Pro Phe Val Val Pro Leu Gly 180 185 190 Ile Gly Ala His Leu Arg Lys Trp Gly Val Pro Glu Ala Arg Ile Val 195 200 205 Glu Leu Asp Trp His Glu Ala His Arg Ile Asp Asp Leu Thr Leu Val 210 215 220 Cys Thr Pro Ala Arg His Phe Ser Gly Arg Leu Phe Ser Arg Asp Ser 225 230 235 240 Thr Leu Trp Ala Ser Trp Val Val Thr Gly Ser Ser His Lys Ala Phe 245 250 255 Phe Gly Gly Asp Thr Gly Tyr Thr Lys Ser Phe Ala Glu Ile Gly Asp 260 265 270 Glu Tyr Gly Pro Phe Asp Leu Thr Leu Leu Pro Ile Gly Ala Tyr His 275 280 285 Pro Ala Phe Ala Asp Ile His Met Asn Pro Glu Glu Ala Val Arg Ala 290 295 300 His Leu Asp Leu Thr Glu Val Asp Asn Ser Leu Met Val Pro Ile His 305 310 315 320 Trp Ala Thr Phe Arg Leu Ala Pro His Pro Trp Ser Glu Pro Ala Glu 325 330 335 Arg Leu Leu Thr Ala Ala Asp Ala Glu Arg Val Arg Leu Thr Val Pro 340 345 350 Ile Pro Gly Gln Arg Val Asp Pro Glu Ser Thr Phe Asp Pro Trp Trp 355 360 365 Arg Phe 370 <210> SEQ ID NO 195 <211> LENGTH: 650 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 195 gacacaccag caccactgtt aacctcgcta gatcagtcgg ccgaacggaa ggacagccgt 60 gaccctgaaa accctagtca ccagcatgac cgctggggca gcagcagccg caacactcgg 120 cgctgccgcc gtgggtgtga cctcgattgc cgtcggtgcg ggtgtcgccg gcgcgtcgcc 180 cgcggtgctg aacgcaccgc tgctttccgc ccctgccccc gatctgcagg gaccgctggt 240 ctccaccttg agcgcgctgt cgggcccggg ctccttcgcc ggcgccaagg ccacctacgt 300 ccagggcggt ctcggccgca tcgaggcccg ggtggccgac agcggataca gcaacgccgc 360 ggccaagggc tacttcccgc tgagcttcac cgtcgccggc atcgaccaga acggtccgat 420 cgtgaccgcc aacgtcaccg cggcggcccc gacgggcgcc gtggccaccc agccgctgac 480 gttcatcgcc gggccgagcc cgaccggatg gcagctgtcc aagcagtccg cactggccct 540 gatgtccgcg gtgggtgatc tcccgcacga ttctggtccg cagcgccgtc acatgtgtgg 600 cggcgctcgg gctgggtggg tgcctgggcg gctgcgcgca agatgaacat 650 <210> SEQ ID NO 196 <211> LENGTH: 159 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 196 Met Thr Ala Gly Ala Ala Ala Ala Ala Thr Leu Gly Ala Ala Ala Val 1 5 10 15 Gly Val Thr Ser Ile Ala Val Gly Ala Gly Val Ala Gly Ala Ser Pro 20 25 30 Ala Val Leu Asn Ala Pro Leu Leu Ser Ala Pro Ala Pro Asp Leu Gln 35 40 45 Gly Pro Leu Val Ser Thr Leu Ser Ala Leu Ser Gly Pro Gly Ser Phe 50 55 60 Ala Gly Ala Lys Ala Thr Tyr Val Gln Gly Gly Leu Gly Arg Ile Glu 65 70 75 80 Ala Arg Val Ala Asp Ser Gly Tyr Ser Asn Ala Ala Ala Lys Gly Tyr 85 90 95 Phe Pro Leu Ser Phe Thr Val Ala Gly Ile Asp Gln Asn Gly Pro Ile 100 105 110 Val Thr Ala Asn Val Thr Ala Ala Ala Pro Thr Gly Ala Val Ala Thr 115 120 125 Gln Pro Leu Thr Phe Ile Ala Gly Pro Ser Pro Thr Gly Trp Gln Leu 130 135 140 Ser Lys Gln Ser Ala Leu Ala Leu Met Ser Ala Val Ile Ala Ala 145 150 155 <210> SEQ ID NO 197 <211> LENGTH: 285 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 197 Met Gln Val Arg Arg Val Leu Gly Ser Val Gly Ala Ala Val Ala Val 1 5 10 15 Ser Ala Ala Leu Trp Gln Thr Gly Val Ser Ile Pro Thr Ala Ser Ala 20 25 30 Asp Pro Cys Pro Asp Ile Glu Val Ile Phe Ala Arg Gly Thr Gly Ala 35 40 45 Glu Pro Gly Leu Gly Trp Val Gly Asp Ala Phe Val Asn Ala Leu Arg 50 55 60 Pro Lys Val Gly Glu Gln Ser Val Gly Thr Tyr Ala Val Asn Tyr Pro 65 70 75 80 Ala Gly Phe Asp Phe Asp Lys Ser Ala Pro Met Gly Ala Ala Asp Ala 85 90 95 Ser Gly Arg Val Gln Trp Met Ala Asp Asn Cys Pro Asp Thr Lys Leu 100 105 110 Val Leu Gly Gly Met Ser Gln Gly Ala Gly Val Ile Asp Leu Ile Thr 115 120 125 Val Asp Pro Arg Pro Leu Gly Arg Phe Thr Pro Thr Pro Met Pro Pro 130 135 140 Arg Val Ala Asp His Val Ala Ala Val Val Val Phe Gly Asn Pro Leu 145 150 155 160 Arg Asp Ile Arg Gly Gly Gly Pro Leu Pro Gln Met Ser Gly Thr Tyr 165 170 175 Gly Pro Lys Ser Ile Asp Leu Cys Ala Leu Asp Asp Pro Phe Cys Ser 180 185 190 Pro Gly Phe Asn Leu Pro Ala His Phe Ala Tyr Ala Asp Asn Gly Met 195 200 205 Val Glu Glu Ala Ala Asn Phe Ala Arg Leu Glu Pro Gly Gln Ser Val 210 215 220 Glu Leu Pro Glu Ala Pro Tyr Leu His Leu Phe Val Pro Arg Gly Glu 225 230 235 240 Val Thr Leu Glu Asp Ala Gly Pro Leu Arg Glu Gly Asp Ala Val Arg 245 250 255 Phe Thr Ala Ser Gly Gly Gln Arg Val Thr Ala Thr Ala Pro Ala Glu 260 265 270 Ile Leu Val Trp Glu Met His Ala Gly Leu Gly Ala Ala 275 280 285 <210> SEQ ID NO 198 <211> LENGTH: 743 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 198 ggatccgcgg caccggctgg tgacgaccaa gtacaacccg gcccgcacct ggacggccga 60 gaactccgtc ggcatcggcg gcgcgtacct gtgcatctac gggatggagg gccccggcgg 120 ctatcagttc gtcggccgca ccacccaggt gtggagtcgt taccgccaca cggcgccgtt 180 cgaacccgga agtccctggc tgctgcggtt tttcgaccga atttcgtggt atccggtgtc 240 ggccgaggag ctgctggaat tgcgagccga catggccgca ggccggggct cggtcgacat 300 caccgacggc gtgttctccc tcgccgagca cgaacggttc ctggccgaca acgccgacga 360 catcgccgcg ttccgttccc ggcaggcggc cgcgttctcc gccgagcgga ccgcgtgggc 420 ggccgccggc gagttcgacc gcgccgagaa agccgcgtcg aaggccaccg acgccgatac 480 cggggacctg gtgctctacg acggtgacga gcgggtcgac gctccgttcg cgtcgagcgt 540 gtggaaggtc gacgtcgccg tcggtgaccg ggtggtggcc ggacagccgt tgctggcgct 600 ggaggcgatg aagatggaga ccgtgctgcg cgccccggcc gacggggtgg tcacccagat 660 cctggtctcc gctgggcatc tcgtcgatcc cggcacccca ctggtcgtgg tcggcaccgg 720 agtgcgcgca tgagcgccgt cga 743 <210> SEQ ID NO 199 <211> LENGTH: 243 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 199 Asp Pro Arg His Arg Leu Val Thr Thr Lys Tyr Asn Pro Ala Arg Thr 1 5 10 15 Trp Thr Ala Glu Asn Ser Val Gly Ile Gly Gly Ala Tyr Leu Cys Ile 20 25 30 Tyr Gly Met Glu Gly Pro Gly Gly Tyr Gln Phe Val Gly Arg Thr Thr 35 40 45 Gln Val Trp Ser Arg Tyr Arg His Thr Ala Pro Phe Glu Pro Gly Ser 50 55 60 Pro Trp Leu Leu Arg Phe Phe Asp Arg Ile Ser Trp Tyr Pro Val Ser 65 70 75 80 Ala Glu Glu Leu Leu Glu Leu Arg Ala Asp Met Ala Ala Gly Arg Gly 85 90 95 Ser Val Asp Ile Thr Asp Gly Val Phe Ser Leu Ala Glu His Glu Arg 100 105 110 Phe Leu Ala Asp Asn Ala Asp Asp Ile Ala Ala Phe Arg Ser Arg Gln 115 120 125 Ala Ala Ala Phe Ser Ala Glu Arg Thr Ala Trp Ala Ala Ala Gly Glu 130 135 140 Phe Asp Arg Ala Glu Lys Ala Ala Ser Lys Ala Thr Asp Ala Asp Thr 145 150 155 160 Gly Asp Leu Val Leu Tyr Asp Gly Asp Glu Arg Val Asp Ala Pro Phe 165 170 175 Ala Ser Ser Val Trp Lys Val Asp Val Ala Val Gly Asp Arg Val Val 180 185 190 Ala Gly Gln Pro Leu Leu Ala Leu Glu Ala Met Lys Met Glu Thr Val 195 200 205 Leu Arg Ala Pro Ala Asp Gly Val Val Thr Gln Ile Leu Val Ser Ala 210 215 220 Gly His Leu Val Asp Pro Gly Thr Pro Leu Val Val Val Gly Thr Gly 225 230 235 240 Val Arg Ala <210> SEQ ID NO 200 <211> LENGTH: 858 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 200 gaaatcccgc gtctgaaacc ctcttttcgc ggcgcccctc aggacggtaa gggggccaag 60 cggattgaaa aatgttcgct gaatgagcct gaaattgcgc gtggctcttg gaaatcagca 120 gcgatgggtt taccgtgtcc actagtcggt ccaaagagga ccactggttt tcggaggttt 180 tgcatgaaca aagcagagct catcgacgta ctcactgaga agctgggctc ggatcgtcgg 240 caagcgactg cggcggtgga gaacgttgtc gacaccatcg tgcgcgccgt gcacaagggt 300 gagagcgtca ccatcacggg cttcggtgtt ttcgagcagc gtcgtcgcgc agcacgcgtg 360 gcacgcaatc cgcgcaccgg cgagaccgtg aaggtcaagc ccacctcagt cccggcattc 420 cgtcccggcg ctcagttcaa ggctgttgtc tctggcgcac agaagcttcc ggccgagggt 480 ccggcggtca agcgcggtgt gaccgcgacg agcaccgccc gcaaggcagc caagaaggct 540 ccggccaaga aggctgccgc gaagaaggcc gcgccggcca agaaggctcc ggcgaagaag 600 gctgcgacca aggctgcacc ggccaagaag gccactgccg ccaagaaggc cgcgccggcc 660 aagaaggcca ctgccgccaa gaaggctgca ccggccaaga aggctccggc caagaaggct 720 gcgaccaagg ctgcaccggc caagaaggct ccggccaaga aggccgcgac caaggctgca 780 ccggccaaga aggctccggc cgccaagaag gcgcccgcca agaaggctcc ggccaagcgc 840 ggcggacgca agtaagtc 858 <210> SEQ ID NO 201 <211> LENGTH: 223 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 201 Met Asn Lys Ala Glu Leu Ile Asp Val Leu Thr Glu Lys Leu Gly Ser 1 5 10 15 Asp Arg Arg Gln Ala Thr Ala Ala Val Glu Asn Val Val Asp Thr Ile 20 25 30 Val Arg Ala Val His Lys Gly Glu Ser Val Thr Ile Thr Gly Phe Gly 35 40 45 Val Phe Glu Gln Arg Arg Arg Ala Ala Arg Val Ala Arg Asn Pro Arg 50 55 60 Thr Gly Glu Thr Val Lys Val Lys Pro Thr Ser Val Pro Ala Phe Arg 65 70 75 80 Pro Gly Ala Gln Phe Lys Ala Val Val Ser Gly Ala Gln Lys Leu Pro 85 90 95 Ala Glu Gly Pro Ala Val Lys Arg Gly Val Thr Ala Thr Ser Thr Ala 100 105 110 Arg Lys Ala Ala Lys Lys Ala Pro Ala Lys Lys Ala Ala Ala Lys Lys 115 120 125 Ala Ala Pro Ala Lys Lys Ala Pro Ala Lys Lys Ala Ala Thr Lys Ala 130 135 140 Ala Pro Ala Lys Lys Ala Thr Ala Ala Lys Lys Ala Ala Pro Ala Lys 145 150 155 160 Lys Ala Thr Ala Ala Lys Lys Ala Ala Pro Ala Lys Lys Ala Pro Ala 165 170 175 Lys Lys Ala Ala Thr Lys Ala Ala Pro Ala Lys Lys Ala Pro Ala Lys 180 185 190 Lys Ala Ala Thr Lys Ala Ala Pro Ala Lys Lys Ala Pro Ala Ala Lys 195 200 205 Lys Ala Pro Ala Lys Lys Ala Pro Ala Lys Arg Gly Gly Arg Lys 210 215 220 <210> SEQ ID NO 202 <211> LENGTH: 570 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 202 agacagacag tgatcgacga aaccctcttc catgccgagg agaagatgga gaaggccgtc 60 tcggtggcac ccgacgacct ggcgtcgatt cgtaccggcc gcgcgaaccc cggcatgttc 120 aaccggatca acatcgacta ctacggcgcc tccaccccga tcacgcagct gtccagcatc 180 aacgtgcccg aggcgcgcat ggtggtgatc aagccctacg aggcgagcca gctgcgcctc 240 atcgaggatg cgatccgcaa ctccgacctc ggcgtcaatc cgaccaacga cggcaacatc 300 atccgggtgt cgatcccgca gctcaccgag gagcgccgcc gcgacctggt caagcaggcc 360 aaggccaagg gcgaggacgc caaggtgtcg gtgcgcaaca tccgtcgcaa ggcgatggag 420 gaactctccc ggatcaagaa ggacggcgac gccggcgaag accaagtgac ccgcgccgag 480 aaggatctcg acaagagcac ccaccagtac acgaatcaga tcgacgaact ggtcaagcac 540 aaggaaggcg agttgctgga ggtctgacca 570 <210> SEQ ID NO 203 <211> LENGTH: 187 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <220> FEATURE: <221> NAME/KEY: UNSURE <222> LOCATION: (186)...(186) <400> SEQUENCE: 203 Val Ile Asp Glu Thr Leu Phe His Ala Glu Glu Lys Met Glu Lys Ala 1 5 10 15 Val Ser Val Ala Pro Asp Asp Leu Ala Ser Ile Arg Thr Gly Arg Ala 20 25 30 Asn Pro Gly Met Phe Asn Arg Ile Asn Ile Asp Tyr Tyr Gly Ala Ser 35 40 45 Thr Pro Ile Thr Gln Leu Ser Ser Ile Asn Val Pro Glu Ala Arg Met 50 55 60 Val Val Ile Lys Pro Tyr Glu Ala Ser Gln Leu Arg Leu Ile Glu Asp 65 70 75 80 Ala Ile Arg Asn Ser Asp Leu Gly Val Asn Pro Thr Asn Asp Gly Asn 85 90 95 Ile Ile Arg Val Ser Ile Pro Gln Leu Thr Glu Glu Arg Arg Arg Asp 100 105 110 Leu Val Lys Gln Ala Lys Ala Lys Gly Glu Asp Ala Lys Val Ser Val 115 120 125 Arg Asn Ile Arg Arg Lys Ala Met Glu Glu Leu Ser Arg Ile Lys Lys 130 135 140 Asp Gly Asp Ala Gly Glu Asp Glu Val Thr Arg Ala Glu Lys Asp Leu 145 150 155 160 Asp Lys Ser Thr His Gln Tyr Thr Asn Gln Ile Asp Glu Leu Val Lys 165 170 175 His Lys Glu Gly Glu Leu Leu Glu Val Xaa Pro 180 185 <210> SEQ ID NO 204 <211> LENGTH: 1364 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 204 cgacctccac ccgggcgtga ggccaaccac taggctggtc accagtagtc gacggcacac 60 ttcaccgaaa aaatgaggac agaggagaca cccgtgacga tccgtgttgg tgtgaacggc 120 ttcggccgta tcggacgcaa cttcttccgc gcgctggacg cgcagaaggc cgaaggcaag 180 aacaaggaca tcgagatcgt cgcggtcaac gacctcaccg acaacgccac gctggcgcac 240 ctgctgaagt tcgactcgat cctgggccgg ctgccctacg acgtgagcct cgaaggcgag 300 gacaccatcg tcgtcggcag caccaagatc aaggcgctcg aggtcaagga aggcccggcg 360 gcgctgccct ggggcgacct gggcgtcgac gtcgtcgtcg agtccaccgg catcttcacc 420 aagcgcgaca aggcccaggg ccacctcgac gcgggcgcca agaaggtcat catctccgcg 480 ccggccaccg atgaggacat caccatcgtg ctcggcgtca acgacgacaa gtacgacggc 540 agccagaaca tcatctccaa cgcgtcgtgc accacgaact gcctcggccc gctggcgaag 600 gtcatcaacg acgagttcgg catcgtcaag ggcctgatga ccaccatcca cgcctacacc 660 caggtccaga acctgcagga cggcccgcac aaggatctgc gccgggcccg cgccgccgcg 720 ctgaacatcg tgccgacctc caccggtgcc gccaaggcca tcggactggt gctgcccgag 780 ctgaagggca agctcgacgg ctacgcgctg cgggtgccga tccccaccgg ctcggtcacc 840 gacctgaccg ccgagctggg caagtcggcc accgtggacg agatcaacgc cgcgatgaag 900 gctgcggccg agggcccgct caagggcatc ctcaagtact acgacgcccc gatcgtgtcc 960 agcgacatcg tcaccgatcc gcacagctcg atcttcgact cgggtctgac caaggtcatc 1020 gacaaccagg ccaaggtcgt gtcctggtac gacaacgagt ggggctactc caaccgcctc 1080 gtcgacctgg tcgccctggt cggcaagtcg ctgtaggggc gagcgaagcg acgggagaac 1140 agaggcgcca tggcgatcaa gtcactcgac gaccttctgt ccgaaggggt gacggggcgg 1200 ggcgtactcg tgcgctccga cctgaacgtc cccctcgacg gcgacacgat caccgacccg 1260 gggcgcatca tcgcctcggt gccgacgttg aaggcgttga gtgacgccgg cgccaaggtg 1320 gtcgtcaccg cgcatctggg caggcccaag ggtgagccgg atcc 1364 <210> SEQ ID NO 205 <211> LENGTH: 340 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 205 Val Thr Ile Arg Val Gly Val Asn Gly Phe Gly Arg Ile Gly Arg Asn 1 5 10 15 Phe Phe Arg Ala Leu Asp Ala Gln Lys Ala Glu Gly Lys Asn Lys Asp 20 25 30 Ile Glu Ile Val Ala Val Asn Asp Leu Thr Asp Asn Ala Thr Leu Ala 35 40 45 His Leu Leu Lys Phe Asp Ser Ile Leu Gly Arg Leu Pro Tyr Asp Val 50 55 60 Ser Leu Glu Gly Glu Asp Thr Ile Val Val Gly Ser Thr Lys Ile Lys 65 70 75 80 Ala Leu Glu Val Lys Glu Gly Pro Ala Ala Leu Pro Trp Gly Asp Leu 85 90 95 Gly Val Asp Val Val Val Glu Ser Thr Gly Ile Phe Thr Lys Arg Asp 100 105 110 Lys Ala Gln Gly His Leu Asp Ala Gly Ala Lys Lys Val Ile Ile Ser 115 120 125 Ala Pro Ala Thr Asp Glu Asp Ile Thr Ile Val Leu Gly Val Asn Asp 130 135 140 Asp Lys Tyr Asp Gly Ser Gln Asn Ile Ile Ser Asn Ala Ser Cys Thr 145 150 155 160 Thr Asn Cys Leu Gly Pro Leu Ala Lys Val Ile Asn Asp Glu Phe Gly 165 170 175 Ile Val Lys Gly Leu Met Thr Thr Ile His Ala Tyr Thr Gln Val Gln 180 185 190 Asn Leu Gln Asp Gly Pro His Lys Asp Leu Arg Arg Ala Arg Ala Ala 195 200 205 Ala Leu Asn Ile Val Pro Thr Ser Thr Gly Ala Ala Lys Ala Ile Gly 210 215 220 Leu Val Leu Pro Glu Leu Lys Gly Lys Leu Asp Gly Tyr Ala Leu Arg 225 230 235 240 Val Pro Ile Pro Thr Gly Ser Val Thr Asp Leu Thr Ala Glu Leu Gly 245 250 255 Lys Ser Ala Thr Val Asp Glu Ile Asn Ala Ala Met Lys Ala Ala Ala 260 265 270 Glu Gly Pro Leu Lys Gly Ile Leu Lys Tyr Tyr Asp Ala Pro Ile Val 275 280 285 Ser Ser Asp Ile Val Thr Asp Pro His Ser Ser Ile Phe Asp Ser Gly 290 295 300 Leu Thr Lys Val Ile Asp Asn Gln Ala Lys Val Val Ser Trp Tyr Asp 305 310 315 320 Asn Glu Trp Gly Tyr Ser Asn Arg Leu Val Asp Leu Val Ala Leu Val 325 330 335 Gly Lys Ser Leu 340 <210> SEQ ID NO 206 <211> LENGTH: 522 <212> TYPE: DNA <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 206 acctacgagt tcgagaacaa ggtcacgggc ggccgcatcc cgcgcgagta catcccgtcg 60 gtggatgccg gcgcgcagga cgccatgcag tacggcgtgc tggccggcta cccgctggtt 120 aacgtcaagc tgacgctgct cgacggtgcc taccacgaag tcgactcgtc ggaaatggca 180 ttcaaggttg ccggctccca ggtcatgaag aaggctgccg cccaggcgca gccggtgatc 240 ctggagccag tgatggcggt cgaggtcacg acgcccgagg attacatggg tgaagtgagc 300 ggcgacctga actcccgccg tggtcagatc caggccatgg aggagcggag cggtgctcgt 360 gtcgtgaagg cgcaggttcc gctgtcggag atgttcggct acgtcggaga ccttcggtcg 420 aagacccagg gccgggccaa ctactccatg gtgttcgact cgtacgccga agttccggcg 480 aacgtgtcga aggagatcat cgcgaaggcg acgggccagt aa 522 <210> SEQ ID NO 207 <211> LENGTH: 173 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 207 Thr Tyr Glu Phe Glu Asn Lys Val Thr Gly Gly Arg Ile Pro Arg Glu 1 5 10 15 Tyr Ile Pro Ser Val Asp Ala Gly Ala Gln Asp Ala Met Gln Tyr Gly 20 25 30 Val Leu Ala Gly Tyr Pro Leu Val Asn Val Lys Leu Thr Leu Leu Asp 35 40 45 Gly Ala Tyr His Glu Val Asp Ser Ser Glu Met Ala Phe Lys Val Ala 50 55 60 Gly Ser Gln Val Met Lys Lys Ala Ala Ala Gln Ala Gln Pro Val Ile 65 70 75 80 Leu Glu Pro Val Met Ala Val Glu Val Thr Thr Pro Glu Asp Tyr Met 85 90 95 Gly Glu Val Ile Gly Asp Leu Asn Ser Arg Arg Gly Gln Ile Gln Ala 100 105 110 Met Glu Glu Arg Ser Gly Ala Arg Val Val Lys Ala Gln Val Pro Leu 115 120 125 Ser Glu Met Phe Gly Tyr Val Gly Asp Leu Arg Ser Lys Thr Gln Gly 130 135 140 Arg Ala Asn Tyr Ser Met Val Phe Asp Ser Tyr Ala Glu Val Pro Ala 145 150 155 160 Asn Val Ser Lys Glu Ile Ile Ala Lys Ala Thr Gly Gln 165 170 <210> SEQ ID NO 208 <211> LENGTH: 12 <212> TYPE: PRT <213> ORGANISM: Mycobacterium vaccae <400> SEQUENCE: 208 Ala Leu Pro Gln Leu Thr Asp Glu Gln Arg Ala Ala 1 5 10 

We claim:
 1. A method for the treatment of asthma in a patient, comprising administering to the patient a composition comprising delipidated and deglycolipidated M. vaccae cells, wherein the delipidated and deglycolipidated M. vaccae cells comprise less than 10% by weight of lipids.
 2. The method of claim 1, wherein the composition is administered intranasally.
 3. The method of claim 1, wherein the composition is administered subcutaneously.
 4. The method of claim 1, wherein the composition additionally comprises an adjuvant.
 5. A method for the treatment of asthma in a patient, comprising administering to the patient a composition comprising delipidated and deglycolipidated M. vaccae cells, wherein the delipidated and deglycolipidated M. vaccae cells comprise more than 33% by weight of amino acids.
 6. The method of claim 5, wherein the composition is administered intranasally.
 7. The method of claim 5, wherein the composition is administered subcutaneously.
 8. The method of claim 5, wherein the composition additionally comprises an adjuvant. 